Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC25.07■■□□□ 1.6
CSB-PGBD3P0DP91 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC25.07■■□□□ 1.6
CSB-PGBD3P0DP91 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CSB-PGBD3P0DP91 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
CSB-PGBD3P0DP91 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CSB-PGBD3P0DP91 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC25.07■■□□□ 1.6
CSB-PGBD3P0DP91 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
CSB-PGBD3P0DP91 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 AL160237.2-201ENST00000556165 472 ntBASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 AC104692.2-201ENST00000603054 253 ntBASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 UBC-206ENST00000538617 1303 ntTSL 5 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CSB-PGBD3P0DP91 Z83836.1-201ENST00000624605 1642 ntBASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 AL022342.1-201ENST00000400363 863 ntBASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 KRT18P31-201ENST00000506277 1292 ntBASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 AC012615.1-201ENST00000565797 1299 ntBASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 AL137060.1-201ENST00000618151 2648 ntBASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
CSB-PGBD3P0DP91 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 KRT18P23-201ENST00000435622 1283 ntBASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 LITAF-220ENST00000620789 692 ntTSL 5 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
CSB-PGBD3P0DP91 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC25.02■■□□□ 1.6
CSB-PGBD3P0DP91 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms