Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC22.34■■□□□ 1.17
HMGB1P09429 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
HMGB1P09429 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC22.34■■□□□ 1.17
HMGB1P09429 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC22.34■■□□□ 1.17
HMGB1P09429 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC22.34■■□□□ 1.17
HMGB1P09429 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC22.34■■□□□ 1.17
HMGB1P09429 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC22.34■■□□□ 1.17
HMGB1P09429 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC22.34■■□□□ 1.17
HMGB1P09429 AC026471.5-201ENST00000615068 467 ntBASIC22.34■■□□□ 1.17
HMGB1P09429 REXO1L10P-201ENST00000615707 1290 ntBASIC22.34■■□□□ 1.17
HMGB1P09429 REXO1L12P-201ENST00000622156 912 ntBASIC22.34■■□□□ 1.17
HMGB1P09429 DECR2-212ENST00000627716 352 ntTSL 2 BASIC22.34■■□□□ 1.17
HMGB1P09429 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC22.34■■□□□ 1.17
HMGB1P09429 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC22.34■■□□□ 1.17
HMGB1P09429 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
HMGB1P09429 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
HMGB1P09429 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
HMGB1P09429 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC22.34■■□□□ 1.17
HMGB1P09429 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC22.33■■□□□ 1.17
HMGB1P09429 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGB1P09429 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGB1P09429 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC22.33■■□□□ 1.17
HMGB1P09429 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGB1P09429 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGB1P09429 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
HMGB1P09429 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGB1P09429 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGB1P09429 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGB1P09429 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.33■■□□□ 1.17
HMGB1P09429 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC22.33■■□□□ 1.17
HMGB1P09429 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC22.33■■□□□ 1.17
HMGB1P09429 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC22.33■■□□□ 1.17
HMGB1P09429 AC068587.9-201ENST00000641814 219 ntBASIC22.33■■□□□ 1.17
HMGB1P09429 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
HMGB1P09429 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HMGB1P09429 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
HMGB1P09429 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
HMGB1P09429 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC22.33■■□□□ 1.16
HMGB1P09429 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
HMGB1P09429 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC22.33■■□□□ 1.16
HMGB1P09429 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGB1P09429 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC22.32■■□□□ 1.16
HMGB1P09429 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGB1P09429 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGB1P09429 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC22.32■■□□□ 1.16
HMGB1P09429 COBL-210ENST00000632460 1941 ntTSL 5 BASIC22.32■■□□□ 1.16
HMGB1P09429 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGB1P09429 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
HMGB1P09429 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HMGB1P09429 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC22.32■■□□□ 1.16
HMGB1P09429 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC22.32■■□□□ 1.16
HMGB1P09429 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC22.32■■□□□ 1.16
HMGB1P09429 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC22.32■■□□□ 1.16
HMGB1P09429 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC22.32■■□□□ 1.16
HMGB1P09429 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC22.32■■□□□ 1.16
HMGB1P09429 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGB1P09429 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGB1P09429 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGB1P09429 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGB1P09429 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGB1P09429 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
HMGB1P09429 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC22.31■■□□□ 1.16
HMGB1P09429 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
HMGB1P09429 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGB1P09429 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
HMGB1P09429 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC22.31■■□□□ 1.16
HMGB1P09429 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC22.31■■□□□ 1.16
HMGB1P09429 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGB1P09429 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC22.31■■□□□ 1.16
HMGB1P09429 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
HMGB1P09429 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC22.31■■□□□ 1.16
HMGB1P09429 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC22.31■■□□□ 1.16
HMGB1P09429 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC22.31■■□□□ 1.16
HMGB1P09429 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC22.31■■□□□ 1.16
HMGB1P09429 GRAMD4P8-201ENST00000605465 1115 ntBASIC22.31■■□□□ 1.16
HMGB1P09429 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC22.31■■□□□ 1.16
HMGB1P09429 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
HMGB1P09429 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGB1P09429 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
HMGB1P09429 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC22.3■■□□□ 1.16
HMGB1P09429 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms