Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC023632.3-201ENST00000521633 145 ntBASIC19.02■□□□□ 0.64
VIMP08670 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.02■□□□□ 0.64
VIMP08670 AC126763.1-201ENST00000552015 2118 ntBASIC19.02■□□□□ 0.64
VIMP08670 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.02■□□□□ 0.64
VIMP08670 AC105020.6-201ENST00000621523 1217 ntBASIC19.02■□□□□ 0.64
VIMP08670 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VIMP08670 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VIMP08670 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VIMP08670 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
VIMP08670 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VIMP08670 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VIMP08670 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VIMP08670 AC116351.2-201ENST00000606540 1585 ntBASIC19.02■□□□□ 0.63
VIMP08670 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.01■□□□□ 0.63
VIMP08670 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.01■□□□□ 0.63
VIMP08670 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.01■□□□□ 0.63
VIMP08670 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.01■□□□□ 0.63
VIMP08670 AC016405.3-201ENST00000607710 860 ntBASIC19.01■□□□□ 0.63
VIMP08670 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 AC073592.3-201ENST00000625118 1834 ntBASIC19.01■□□□□ 0.63
VIMP08670 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.01■□□□□ 0.63
VIMP08670 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VIMP08670 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VIMP08670 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
VIMP08670 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VIMP08670 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19■□□□□ 0.63
VIMP08670 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19■□□□□ 0.63
VIMP08670 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VIMP08670 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19■□□□□ 0.63
VIMP08670 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 YBX1P1-201ENST00000445822 960 ntBASIC19■□□□□ 0.63
VIMP08670 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19■□□□□ 0.63
VIMP08670 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 AL162741.1-201ENST00000565563 1558 ntBASIC19■□□□□ 0.63
VIMP08670 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
VIMP08670 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VIMP08670 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
VIMP08670 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19■□□□□ 0.63
VIMP08670 LINC00896-202ENST00000609602 2128 ntBASIC19■□□□□ 0.63
VIMP08670 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19■□□□□ 0.63
VIMP08670 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19■□□□□ 0.63
VIMP08670 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VIMP08670 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19■□□□□ 0.63
VIMP08670 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
VIMP08670 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.99■□□□□ 0.63
VIMP08670 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 AC104417.2-201ENST00000562989 1793 ntBASIC18.99■□□□□ 0.63
VIMP08670 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.99■□□□□ 0.63
VIMP08670 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.99■□□□□ 0.63
VIMP08670 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
VIMP08670 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VIMP08670 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 AC027612.3-201ENST00000413684 1047 ntBASIC18.99■□□□□ 0.63
VIMP08670 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms