Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 AC104390.1-201ENST00000555663 520 ntBASIC20.02■□□□□ 0.8
RB1P06400 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.02■□□□□ 0.8
RB1P06400 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.02■□□□□ 0.8
RB1P06400 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.02■□□□□ 0.8
RB1P06400 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.02■□□□□ 0.8
RB1P06400 AL121912.1-201ENST00000603683 238 ntBASIC20.02■□□□□ 0.8
RB1P06400 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RB1P06400 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
RB1P06400 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RB1P06400 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.02■□□□□ 0.8
RB1P06400 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RB1P06400 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
RB1P06400 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
RB1P06400 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RB1P06400 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.02■□□□□ 0.79
RB1P06400 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
RB1P06400 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
RB1P06400 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.01■□□□□ 0.79
RB1P06400 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
RB1P06400 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RB1P06400 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RB1P06400 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RB1P06400 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
RB1P06400 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.01■□□□□ 0.79
RB1P06400 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RB1P06400 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.01■□□□□ 0.79
RB1P06400 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.01■□□□□ 0.79
RB1P06400 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.01■□□□□ 0.79
RB1P06400 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.01■□□□□ 0.79
RB1P06400 AC005332.3-201ENST00000589904 676 ntBASIC20.01■□□□□ 0.79
RB1P06400 IGHV3-41-201ENST00000613121 348 ntBASIC20.01■□□□□ 0.79
RB1P06400 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
RB1P06400 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RB1P06400 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RB1P06400 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.01■□□□□ 0.79
RB1P06400 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RB1P06400 AL137060.1-201ENST00000618151 2648 ntBASIC20.01■□□□□ 0.79
RB1P06400 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.01■□□□□ 0.79
RB1P06400 HOXB1-202ENST00000577092 1414 ntBASIC20.01■□□□□ 0.79
RB1P06400 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.01■□□□□ 0.79
RB1P06400 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 AL109659.2-201ENST00000606809 1674 ntBASIC20■□□□□ 0.79
RB1P06400 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
RB1P06400 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20■□□□□ 0.79
RB1P06400 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20■□□□□ 0.79
RB1P06400 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20■□□□□ 0.79
RB1P06400 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
RB1P06400 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20■□□□□ 0.79
RB1P06400 KRT18P23-201ENST00000435622 1283 ntBASIC20■□□□□ 0.79
RB1P06400 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20■□□□□ 0.79
RB1P06400 AP003733.1-201ENST00000491725 852 ntBASIC20■□□□□ 0.79
RB1P06400 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 AC010240.3-201ENST00000607688 395 ntBASIC20■□□□□ 0.79
RB1P06400 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20■□□□□ 0.79
RB1P06400 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
RB1P06400 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
RB1P06400 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20■□□□□ 0.79
RB1P06400 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
RB1P06400 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20■□□□□ 0.79
RB1P06400 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20■□□□□ 0.79
RB1P06400 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20■□□□□ 0.79
RB1P06400 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20■□□□□ 0.79
RB1P06400 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20■□□□□ 0.79
RB1P06400 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20■□□□□ 0.79
RB1P06400 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20■□□□□ 0.79
RB1P06400 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.99■□□□□ 0.79
RB1P06400 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.99■□□□□ 0.79
RB1P06400 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
RB1P06400 AC074051.2-201ENST00000565115 352 ntBASIC19.99■□□□□ 0.79
RB1P06400 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.99■□□□□ 0.79
RB1P06400 Z69720.1-201ENST00000601483 472 ntBASIC19.99■□□□□ 0.79
RB1P06400 AL390719.2-201ENST00000606993 987 ntBASIC19.99■□□□□ 0.79
RB1P06400 AL353801.3-201ENST00000609898 542 ntBASIC19.99■□□□□ 0.79
RB1P06400 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RB1P06400 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
RB1P06400 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
RB1P06400 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RB1P06400 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms