Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 THADA-205ENST00000404790 3043 ntTSL 1 (best) BASIC9.21□□□□□ -0.933e-6■■■■■ 137.9
SF3B1O75533 HUWE1-204ENST00000426907 4805 ntTSL 59.21□□□□□ -0.942e-6■■■■■ 137.9
SF3B1O75533 WIPI2-210ENST00000480238 470 ntTSL 39.2□□□□□ -0.943e-6■■■■■ 137.9
SF3B1O75533 BCO2-204ENST00000460924 2880 ntTSL 29.18□□□□□ -0.943e-6■■■■■ 137.9
SF3B1O75533 LANCL1-201ENST00000233714 1647 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.943e-6■■■■■ 137.9
SF3B1O75533 SERP1-207ENST00000491195 716 ntTSL 39.18□□□□□ -0.943e-6■■■■■ 137.9
SF3B1O75533 CYB5A-207ENST00000583418 5913 ntTSL 29.16□□□□□ -0.943e-6■■■■■ 137.9
SF3B1O75533 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC9.15□□□□□ -0.953e-6■■■■■ 137.9
SF3B1O75533 RACK1-216ENST00000507273 358 ntTSL 29.14□□□□□ -0.953e-6■■■■■ 137.9
SF3B1O75533 SPARC-208ENST00000538026 576 ntTSL 59.14□□□□□ -0.953e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-212ENST00000589547 541 ntTSL 49.14□□□□□ -0.953e-6■■■■■ 137.9
SF3B1O75533 TTLL4-213ENST00000461181 590 ntTSL 49.13□□□□□ -0.952e-11■■■■■ 137.9
SF3B1O75533 ARMCX5-GPRASP2-206ENST00000476910 1848 ntTSL 1 (best) BASIC9.13□□□□□ -0.953e-6■■■■■ 137.9
SF3B1O75533 RPL7P7-201ENST00000428803 703 ntBASIC9.12□□□□□ -0.953e-6■■■■■ 137.9
SF3B1O75533 GDI2-201ENST00000380127 584 ntTSL 39.08□□□□□ -0.963e-6■■■■■ 137.9
SF3B1O75533 GPATCH8-201ENST00000335500 8109 ntTSL 29.08□□□□□ -0.963e-6■■■■■ 137.9
SF3B1O75533 NRG3-204ENST00000404576 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.963e-6■■■■■ 137.9
SF3B1O75533 SMAD4-206ENST00000588860 779 ntTSL 49.06□□□□□ -0.963e-6■■■■■ 137.9
SF3B1O75533 NUMB-210ENST00000554394 954 ntTSL 39.05□□□□□ -0.962e-6■■■■■ 137.9
SF3B1O75533 HERC3-201ENST00000264345 4764 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.966e-8■■■■■ 137.9
SF3B1O75533 MAP3K8-202ENST00000375321 2518 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.963e-6■■■■■ 137.9
SF3B1O75533 LINC01572-201ENST00000561611 2194 ntTSL 3 BASIC9.04□□□□□ -0.963e-6■■■■■ 137.9
SF3B1O75533 ZNF410-225ENST00000639051 936 ntTSL 5 BASIC9.04□□□□□ -0.963e-6■■■■■ 137.9
SF3B1O75533 ELMO2-212ENST00000467800 4121 ntTSL 1 (best)9.03□□□□□ -0.963e-6■■■■■ 137.9
SF3B1O75533 ACVR2A-207ENST00000535787 5166 ntTSL 2 BASIC9.02□□□□□ -0.973e-6■■■■■ 137.9
SF3B1O75533 COCH-211ENST00000557065 654 ntTSL 59.01□□□□□ -0.973e-6■■■■■ 137.9
SF3B1O75533 CADM2-203ENST00000407528 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.973e-6■■■■■ 137.9
SF3B1O75533 GOLGA8B-201ENST00000342314 4335 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.973e-6■■■■■ 137.9
SF3B1O75533 PPIA-206ENST00000480603 842 ntTSL 38.98□□□□□ -0.973e-6■■■■■ 137.9
SF3B1O75533 WDR11-207ENST00000604220 570 ntTSL 58.97□□□□□ -0.973e-6■■■■■ 137.9
SF3B1O75533 SNCA-206ENST00000420646 3127 ntTSL 2 BASIC8.97□□□□□ -0.973e-6■■■■■ 137.9
SF3B1O75533 DCLRE1C-206ENST00000378254 2485 ntTSL 1 (best) BASIC8.96□□□□□ -0.983e-6■■■■■ 137.9
SF3B1O75533 SNCA-201ENST00000336904 3041 ntAPPRIS P1 TSL 2 BASIC8.96□□□□□ -0.983e-6■■■■■ 137.9
SF3B1O75533 AC005520.1-201ENST00000556551 3695 ntAPPRIS P1 TSL 2 BASIC8.95□□□□□ -0.983e-6■■■■■ 137.9
SF3B1O75533 LIMK2-201ENST00000331728 3670 ntAPPRIS P4 TSL 1 (best) BASIC8.93□□□□□ -0.983e-6■■■■■ 137.9
SF3B1O75533 C1orf123-204ENST00000478839 1908 ntTSL 28.93□□□□□ -0.983e-6■■■■■ 137.9
SF3B1O75533 ALAD-204ENST00000452726 583 ntTSL 38.92□□□□□ -0.983e-6■■■■■ 137.9
SF3B1O75533 CPEB4-209ENST00000522336 1551 ntTSL 5 BASIC8.9□□□□□ -0.983e-6■■■■■ 137.9
SF3B1O75533 MAP3K3-211ENST00000585302 678 ntTSL 38.9□□□□□ -0.982e-6■■■■■ 137.9
SF3B1O75533 BCO2-201ENST00000357685 2930 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.983e-6■■■■■ 137.9
SF3B1O75533 SMYD4-204ENST00000570368 793 ntTSL 38.89□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-214ENST00000589586 620 ntTSL 38.88□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 TBC1D9B-214ENST00000522029 616 ntTSL 38.88□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 TMEM144-201ENST00000296529 3442 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 L3MBTL2-204ENST00000452106 3282 ntTSL 28.88□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 EXOC4-205ENST00000462055 2364 ntTSL 1 (best)8.87□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC8.86□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 LCMT1-AS1-202ENST00000563962 766 ntTSL 3 BASIC8.86□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 INVS-204ENST00000460636 954 ntTSL 58.85□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 ZNF143-210ENST00000496276 563 ntTSL 48.84□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC8.84□□□□□ -0.993e-6■■■■■ 137.9
SF3B1O75533 NRG3-207ENST00000555784 1606 ntTSL 1 (best)8.83□□□□□ -13e-6■■■■■ 137.9
SF3B1O75533 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC8.83□□□□□ -13e-6■■■■■ 137.9
SF3B1O75533 ARMCX5-205ENST00000479502 822 ntTSL 1 (best)8.82□□□□□ -13e-6■■■■■ 137.9
SF3B1O75533 ELMO2-202ENST00000352077 2157 ntAPPRIS ALT1 TSL 5 BASIC8.82□□□□□ -13e-6■■■■■ 137.9
SF3B1O75533 EMC3-AS1-204ENST00000430621 683 ntTSL 2 BASIC8.81□□□□□ -16e-8■■■■■ 137.9
SF3B1O75533 ZNF143-214ENST00000531943 555 ntTSL 48.8□□□□□ -13e-6■■■■■ 137.9
SF3B1O75533 RHOH-209ENST00000511121 571 ntTSL 28.8□□□□□ -13e-6■■■■■ 137.9
SF3B1O75533 PAX8-AS1-201ENST00000333145 2319 ntTSL 2 BASIC8.76□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 LRRC37A-202ENST00000393465 4997 ntAPPRIS ALT2 TSL 5 BASIC8.76□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 PRMT5-218ENST00000555454 771 ntTSL 58.76□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 ARMCX5-GPRASP2-205ENST00000475738 668 ntTSL 38.76□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 ARMCX5-GPRASP2-204ENST00000466616 964 ntTSL 1 (best)8.76□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 PCTP-205ENST00000572536 647 ntTSL 38.76□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 OSBPL3-205ENST00000409452 3344 ntTSL 1 (best)8.75□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 GLA-205ENST00000480513 612 ntTSL 38.74□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 CPEB4-206ENST00000519467 1348 ntTSL 58.73□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 ZNF410-213ENST00000555620 613 ntTSL 28.73□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 MIATNB-204ENST00000437071 1006 ntTSL 3 BASIC8.72□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC8.72□□□□□ -1.013e-6■■■■■ 137.9
SF3B1O75533 OSBPL3-206ENST00000409555 3088 ntTSL 58.69□□□□□ -1.023e-6■■■■■ 137.9
SF3B1O75533 EXOC4-222ENST00000492326 549 ntTSL 48.69□□□□□ -1.023e-6■■■■■ 137.9
SF3B1O75533 THADA-201ENST00000398653 5900 ntTSL 28.68□□□□□ -1.023e-6■■■■■ 137.9
SF3B1O75533 LINC01572-203ENST00000563823 563 ntTSL 4 BASIC8.68□□□□□ -1.023e-6■■■■■ 137.9
SF3B1O75533 AC005954.1-201ENST00000591962 337 ntTSL 3 BASIC8.66□□□□□ -1.023e-6■■■■■ 137.9
SF3B1O75533 BLCAP-206ENST00000411780 714 ntTSL 38.65□□□□□ -1.023e-6■■■■■ 137.9
SF3B1O75533 ZNF814-201ENST00000435989 3146 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.033e-6■■■■■ 137.9
SF3B1O75533 XIRP2-206ENST00000409728 3391 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.033e-6■■■■■ 137.9
SF3B1O75533 ASCC1-207ENST00000486689 1798 ntTSL 58.63□□□□□ -1.033e-6■■■■■ 137.9
SF3B1O75533 UGP2-224ENST00000494536 581 ntTSL 28.62□□□□□ -1.033e-6■■■■■ 137.9
SF3B1O75533 CAT-202ENST00000525707 562 ntTSL 28.62□□□□□ -1.033e-6■■■■■ 137.9
SF3B1O75533 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.033e-6■■■■■ 137.9
SF3B1O75533 GATS-208ENST00000445230 451 ntTSL 38.59□□□□□ -1.033e-6■■■■■ 137.9
SF3B1O75533 TRIM5-201ENST00000380027 2290 ntTSL 5 BASIC8.57□□□□□ -1.045e-6■■■■■ 137.9
SF3B1O75533 CDK17-204ENST00000548422 892 ntTSL 38.57□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 DET1-202ENST00000444300 2154 ntTSL 5 BASIC8.55□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 PCTP-208ENST00000576221 609 ntTSL 58.54□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 GON4L-219ENST00000622608 4801 ntTSL 5 BASIC8.53□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 RHOH-210ENST00000511967 423 ntTSL 38.53□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 FNBP4-204ENST00000525792 840 ntTSL 38.53□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 COPS3-215ENST00000578317 1625 ntTSL 28.52□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 KIF21A-204ENST00000544797 5040 ntTSL 1 (best) BASIC8.52□□□□□ -1.043e-6■■■■■ 137.9
SF3B1O75533 NBEAL1-205ENST00000460416 518 ntTSL 58.5□□□□□ -1.053e-6■■■■■ 137.9
SF3B1O75533 WDR76-201ENST00000263795 3978 ntAPPRIS P3 TSL 1 (best) BASIC8.49□□□□□ -1.053e-6■■■■■ 137.9
SF3B1O75533 PAX8-AS1-210ENST00000553869 560 ntTSL 58.49□□□□□ -1.053e-6■■■■■ 137.9
SF3B1O75533 PSMD8-203ENST00000590331 422 ntTSL 28.49□□□□□ -1.053e-6■■■■■ 137.9
SF3B1O75533 METTL2A-204ENST00000616852 3150 ntTSL 2 BASIC8.48□□□□□ -1.053e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1696.2 ms