Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN3O15551 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN3O15551 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CLDN3O15551 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.68■□□□□ 0.9
CLDN3O15551 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CLDN3O15551 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.68■□□□□ 0.9
CLDN3O15551 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CLDN3O15551 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.68■□□□□ 0.9
CLDN3O15551 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.68■□□□□ 0.9
CLDN3O15551 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.68■□□□□ 0.9
CLDN3O15551 AP003041.3-201ENST00000527151 707 ntBASIC20.68■□□□□ 0.9
CLDN3O15551 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
CLDN3O15551 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.68■□□□□ 0.9
CLDN3O15551 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CLDN3O15551 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN3O15551 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN3O15551 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.68■□□□□ 0.9
CLDN3O15551 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN3O15551 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN3O15551 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
CLDN3O15551 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.67■□□□□ 0.9
CLDN3O15551 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CLDN3O15551 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CLDN3O15551 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 HMGA1P5-201ENST00000412453 271 ntBASIC20.67■□□□□ 0.9
CLDN3O15551 AC113347.1-201ENST00000413321 391 ntBASIC20.67■□□□□ 0.9
CLDN3O15551 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.67■□□□□ 0.9
CLDN3O15551 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.67■□□□□ 0.9
CLDN3O15551 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.67■□□□□ 0.9
CLDN3O15551 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.67■□□□□ 0.9
CLDN3O15551 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 KRT8P3-201ENST00000519669 1449 ntBASIC20.67■□□□□ 0.9
CLDN3O15551 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN3O15551 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.66■□□□□ 0.9
CLDN3O15551 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.66■□□□□ 0.9
CLDN3O15551 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CLDN3O15551 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CLDN3O15551 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.66■□□□□ 0.9
CLDN3O15551 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.66■□□□□ 0.9
CLDN3O15551 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
CLDN3O15551 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CLDN3O15551 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CLDN3O15551 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
CLDN3O15551 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CLDN3O15551 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 AP000974.1-201ENST00000623909 2387 ntBASIC20.66■□□□□ 0.9
CLDN3O15551 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CLDN3O15551 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN3O15551 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.65■□□□□ 0.9
CLDN3O15551 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.65■□□□□ 0.9
CLDN3O15551 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CLDN3O15551 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
CLDN3O15551 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CLDN3O15551 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.65■□□□□ 0.9
CLDN3O15551 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 AL137013.1-201ENST00000432946 1228 ntBASIC20.65■□□□□ 0.9
CLDN3O15551 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.65■□□□□ 0.9
CLDN3O15551 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.65■□□□□ 0.9
CLDN3O15551 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
CLDN3O15551 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.65■□□□□ 0.9
CLDN3O15551 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.65■□□□□ 0.9
CLDN3O15551 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN3O15551 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.65■□□□□ 0.9
CLDN3O15551 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
CLDN3O15551 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CLDN3O15551 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLDN3O15551 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CLDN3O15551 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CLDN3O15551 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLDN3O15551 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLDN3O15551 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.64■□□□□ 0.9
CLDN3O15551 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms