Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP3Q9Y6I4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.83■□□□□ 0.76
USP3Q9Y6I4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.82■□□□□ 0.76
USP3Q9Y6I4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 GPAT2P1-201ENST00000444924 1672 ntBASIC19.81■□□□□ 0.76
USP3Q9Y6I4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 AL023284.2-201ENST00000405850 579 ntBASIC19.81■□□□□ 0.76
USP3Q9Y6I4 LIN28AP1-201ENST00000429574 405 ntBASIC19.81■□□□□ 0.76
USP3Q9Y6I4 KRT18P57-201ENST00000443599 1254 ntBASIC19.81■□□□□ 0.76
USP3Q9Y6I4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 AL512604.3-201ENST00000569583 964 ntBASIC19.81■□□□□ 0.76
USP3Q9Y6I4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 KRT8P45-201ENST00000414328 1447 ntBASIC19.81■□□□□ 0.76
USP3Q9Y6I4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 AL512353.2-201ENST00000448759 1962 ntBASIC19.81■□□□□ 0.76
USP3Q9Y6I4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP3Q9Y6I4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 AC087289.5-201ENST00000586076 3175 ntBASIC19.8■□□□□ 0.76
USP3Q9Y6I4 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 TMPOP1-202ENST00000424642 1267 ntBASIC19.8■□□□□ 0.76
USP3Q9Y6I4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP3Q9Y6I4 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.79■□□□□ 0.76
USP3Q9Y6I4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
USP3Q9Y6I4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms