Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 FITM1-202ENST00000559294 800 ntBASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 AC131212.4-201ENST00000623606 975 ntBASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHB3Q9Y5E6 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 AC004980.1-204ENST00000429707 299 ntBASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 CROCCP3-202ENST00000420820 1947 ntBASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.55■□□□□ 0.56
PCDHB3Q9Y5E6 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 KRT18P35-201ENST00000510488 1269 ntBASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 DGCR10-201ENST00000609839 495 ntBASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
PCDHB3Q9Y5E6 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 AC005521.1-201ENST00000393351 872 ntBASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 MESTP1-201ENST00000404287 994 ntBASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 AL137013.1-201ENST00000432946 1228 ntBASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHB3Q9Y5E6 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms