Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC29.29■■■□□ 2.28
CDK11AQ9UQ88 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC29.29■■■□□ 2.28
CDK11AQ9UQ88 AL137060.1-201ENST00000618151 2648 ntBASIC29.29■■■□□ 2.28
CDK11AQ9UQ88 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC29.29■■■□□ 2.28
CDK11AQ9UQ88 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CDK11AQ9UQ88 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CDK11AQ9UQ88 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 MPI-205ENST00000562606 1052 ntTSL 3 BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 TBCB-205ENST00000585746 875 ntTSL 3 BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDK11AQ9UQ88 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 AL845331.1-201ENST00000424978 1190 ntBASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 UNC93B7-201ENST00000509439 705 ntBASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 KLK8-205ENST00000593490 267 ntTSL 3 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
CDK11AQ9UQ88 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
CDK11AQ9UQ88 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
CDK11AQ9UQ88 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC29.26■■■□□ 2.28
CDK11AQ9UQ88 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
CDK11AQ9UQ88 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 DRAXINP1-201ENST00000437611 948 ntBASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 HOXB1-202ENST00000577092 1414 ntBASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CDK11AQ9UQ88 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 KRT18P1-202ENST00000452408 1331 ntBASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDK11AQ9UQ88 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC29.24■■■□□ 2.27
CDK11AQ9UQ88 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
CDK11AQ9UQ88 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
CDK11AQ9UQ88 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
CDK11AQ9UQ88 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
CDK11AQ9UQ88 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
CDK11AQ9UQ88 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
CDK11AQ9UQ88 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CDK11AQ9UQ88 AC104390.1-201ENST00000555663 520 ntBASIC29.23■■■□□ 2.27
CDK11AQ9UQ88 TPSP2-201ENST00000561760 610 ntBASIC29.23■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms