Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4AQ9UN37 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
VPS4AQ9UN37 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4AQ9UN37 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4AQ9UN37 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4AQ9UN37 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4AQ9UN37 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4AQ9UN37 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 AC026471.1-201ENST00000564629 3026 ntBASIC18.33■□□□□ 0.52
VPS4AQ9UN37 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4AQ9UN37 AC141586.3-201ENST00000562166 1838 ntBASIC18.33■□□□□ 0.52
VPS4AQ9UN37 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 HTR7P1-201ENST00000538670 1336 ntBASIC18.32■□□□□ 0.52
VPS4AQ9UN37 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 AF186192.3-201ENST00000583427 947 ntBASIC18.32■□□□□ 0.52
VPS4AQ9UN37 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 AC124283.5-201ENST00000624661 1809 ntBASIC18.32■□□□□ 0.52
VPS4AQ9UN37 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4AQ9UN37 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 AC005521.1-201ENST00000393351 872 ntBASIC18.31■□□□□ 0.52
VPS4AQ9UN37 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 TEX21P-204ENST00000641479 1693 ntBASIC18.31■□□□□ 0.52
VPS4AQ9UN37 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4AQ9UN37 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms