Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC005332.8-201ENST00000622750 2735 ntBASIC21.79■■□□□ 1.08
DDX41Q9UJV9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 ATP5G1P1-201ENST00000448724 379 ntBASIC21.78■■□□□ 1.08
DDX41Q9UJV9 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX41Q9UJV9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 HMGA1P5-201ENST00000412453 271 ntBASIC21.77■■□□□ 1.08
DDX41Q9UJV9 AC007663.1-201ENST00000438948 1240 ntBASIC21.77■■□□□ 1.08
DDX41Q9UJV9 CCR12P-201ENST00000446203 998 ntBASIC21.77■■□□□ 1.08
DDX41Q9UJV9 AL023803.3-201ENST00000615559 522 ntBASIC21.77■■□□□ 1.08
DDX41Q9UJV9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DDX41Q9UJV9 AC007613.1-201ENST00000572811 2597 ntBASIC21.77■■□□□ 1.08
DDX41Q9UJV9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.77■■□□□ 1.07
DDX41Q9UJV9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 AC092338.2-201ENST00000568827 1415 ntBASIC21.76■■□□□ 1.07
DDX41Q9UJV9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.76■■□□□ 1.07
DDX41Q9UJV9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms