Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 KRT8P32-201ENST00000512863 1461 ntBASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 AL390955.1-201ENST00000428694 934 ntBASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 AC068587.9-201ENST00000641814 219 ntBASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BLOC1S4Q9NUP1 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 HEIH-201ENST00000623091 1652 ntBASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 UNC93B2-201ENST00000285383 730 ntBASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BLOC1S4Q9NUP1 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 AL138781.2-201ENST00000617896 1843 ntBASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 KRT17P2-201ENST00000300992 1314 ntBASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 FITM1-202ENST00000559294 800 ntBASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
BLOC1S4Q9NUP1 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.08■□□□□ 0.96
BLOC1S4Q9NUP1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
BLOC1S4Q9NUP1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BLOC1S4Q9NUP1 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BLOC1S4Q9NUP1 MTMR9LP-203ENST00000426597 1545 ntBASIC21.08■□□□□ 0.96
BLOC1S4Q9NUP1 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
BLOC1S4Q9NUP1 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
BLOC1S4Q9NUP1 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
BLOC1S4Q9NUP1 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.06■□□□□ 0.96
BLOC1S4Q9NUP1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BLOC1S4Q9NUP1 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.06■□□□□ 0.96
BLOC1S4Q9NUP1 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BLOC1S4Q9NUP1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BLOC1S4Q9NUP1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.06■□□□□ 0.96
BLOC1S4Q9NUP1 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.06■□□□□ 0.96
BLOC1S4Q9NUP1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.06■□□□□ 0.96
BLOC1S4Q9NUP1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms