Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 CKBP1-201ENST00000565489 1086 ntBASIC20.37■□□□□ 0.85
SIX2Q9NPC8 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.37■□□□□ 0.85
SIX2Q9NPC8 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.36■□□□□ 0.85
SIX2Q9NPC8 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 AC090164.3-201ENST00000610780 2143 ntBASIC20.35■□□□□ 0.85
SIX2Q9NPC8 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SIX2Q9NPC8 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 ABHD17AP1-201ENST00000358206 933 ntBASIC20.34■□□□□ 0.85
SIX2Q9NPC8 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 CD177P1-201ENST00000606252 935 ntBASIC20.34■□□□□ 0.85
SIX2Q9NPC8 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.34■□□□□ 0.85
SIX2Q9NPC8 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 AL158047.1-201ENST00000445918 881 ntBASIC20.33■□□□□ 0.85
SIX2Q9NPC8 FAM207BP-201ENST00000447172 505 ntBASIC20.33■□□□□ 0.85
SIX2Q9NPC8 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms