Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 TSPY17P-201ENST00000450329 467 ntBASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 AL023803.3-201ENST00000615559 522 ntBASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
TRIM39Q9HCM9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 AL353719.1-201ENST00000566847 864 ntBASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM39Q9HCM9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 FEM1AP3-201ENST00000403722 1741 ntBASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 AC005332.7-201ENST00000614046 2005 ntBASIC18.78■□□□□ 0.6
TRIM39Q9HCM9 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 AL020996.1-203ENST00000536896 2307 ntBASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM39Q9HCM9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM39Q9HCM9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.77■□□□□ 0.59
TRIM39Q9HCM9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM39Q9HCM9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM39Q9HCM9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM39Q9HCM9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM39Q9HCM9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
TRIM39Q9HCM9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms