Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIME1Q9H400 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.65■□□□□ 0.26
LIME1Q9H400 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.65■□□□□ 0.26
LIME1Q9H400 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LIME1Q9H400 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
LIME1Q9H400 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.64■□□□□ 0.25
LIME1Q9H400 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.64■□□□□ 0.25
LIME1Q9H400 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.64■□□□□ 0.25
LIME1Q9H400 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.64■□□□□ 0.25
LIME1Q9H400 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.64■□□□□ 0.25
LIME1Q9H400 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.64■□□□□ 0.25
LIME1Q9H400 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.64■□□□□ 0.25
LIME1Q9H400 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LIME1Q9H400 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.64■□□□□ 0.25
LIME1Q9H400 AC012313.10-201ENST00000623509 926 ntBASIC16.64■□□□□ 0.25
LIME1Q9H400 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.64■□□□□ 0.25
LIME1Q9H400 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIME1Q9H400 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
LIME1Q9H400 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.64■□□□□ 0.25
LIME1Q9H400 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC16.64■□□□□ 0.25
LIME1Q9H400 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LIME1Q9H400 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.63■□□□□ 0.25
LIME1Q9H400 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.63■□□□□ 0.25
LIME1Q9H400 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 KRT18P38-201ENST00000449496 1282 ntBASIC16.63■□□□□ 0.25
LIME1Q9H400 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 AC140113.3-201ENST00000605663 199 ntBASIC16.63■□□□□ 0.25
LIME1Q9H400 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 AL023803.3-201ENST00000615559 522 ntBASIC16.63■□□□□ 0.25
LIME1Q9H400 AC116407.4-201ENST00000623319 1061 ntBASIC16.63■□□□□ 0.25
LIME1Q9H400 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
LIME1Q9H400 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.63■□□□□ 0.25
LIME1Q9H400 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIME1Q9H400 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LIME1Q9H400 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
LIME1Q9H400 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.62■□□□□ 0.25
LIME1Q9H400 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.62■□□□□ 0.25
LIME1Q9H400 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LIME1Q9H400 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LIME1Q9H400 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
LIME1Q9H400 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.62■□□□□ 0.25
LIME1Q9H400 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.62■□□□□ 0.25
LIME1Q9H400 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.62■□□□□ 0.25
LIME1Q9H400 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LIME1Q9H400 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LIME1Q9H400 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIME1Q9H400 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIME1Q9H400 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms