Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
TIMP4Q99727 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TIMP4Q99727 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.39■□□□□ 0.38
TIMP4Q99727 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.39■□□□□ 0.38
TIMP4Q99727 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TIMP4Q99727 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TIMP4Q99727 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TIMP4Q99727 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TIMP4Q99727 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TIMP4Q99727 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TIMP4Q99727 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.39■□□□□ 0.37
TIMP4Q99727 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
TIMP4Q99727 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.39■□□□□ 0.37
TIMP4Q99727 RCN1P1-201ENST00000400413 996 ntBASIC17.39■□□□□ 0.37
TIMP4Q99727 FAM207BP-201ENST00000447172 505 ntBASIC17.39■□□□□ 0.37
TIMP4Q99727 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.39■□□□□ 0.37
TIMP4Q99727 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.39■□□□□ 0.37
TIMP4Q99727 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TIMP4Q99727 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.39■□□□□ 0.37
TIMP4Q99727 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TIMP4Q99727 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TIMP4Q99727 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TIMP4Q99727 KRT18P22-201ENST00000402024 1347 ntBASIC17.39■□□□□ 0.37
TIMP4Q99727 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
TIMP4Q99727 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TIMP4Q99727 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TIMP4Q99727 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.39■□□□□ 0.37
TIMP4Q99727 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.38■□□□□ 0.37
TIMP4Q99727 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.38■□□□□ 0.37
TIMP4Q99727 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.38■□□□□ 0.37
TIMP4Q99727 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.38■□□□□ 0.37
TIMP4Q99727 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.38■□□□□ 0.37
TIMP4Q99727 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.38■□□□□ 0.37
TIMP4Q99727 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.38■□□□□ 0.37
TIMP4Q99727 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.38■□□□□ 0.37
TIMP4Q99727 C2orf69P3-201ENST00000565542 1120 ntBASIC17.38■□□□□ 0.37
TIMP4Q99727 AC005363.2-201ENST00000618631 242 ntBASIC17.38■□□□□ 0.37
TIMP4Q99727 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
TIMP4Q99727 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TIMP4Q99727 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
TIMP4Q99727 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.38■□□□□ 0.37
TIMP4Q99727 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.37■□□□□ 0.37
TIMP4Q99727 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.37■□□□□ 0.37
TIMP4Q99727 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.37■□□□□ 0.37
TIMP4Q99727 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.37■□□□□ 0.37
TIMP4Q99727 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.37■□□□□ 0.37
TIMP4Q99727 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TIMP4Q99727 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
TIMP4Q99727 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TIMP4Q99727 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.36■□□□□ 0.37
TIMP4Q99727 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms