Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 MIR4785-201ENST00000585005 73 ntBASIC18.15■□□□□ 0.5
VMP1Q96GC9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 CD177P1-201ENST00000606252 935 ntBASIC18.15■□□□□ 0.5
VMP1Q96GC9 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 KRT17P2-201ENST00000300992 1314 ntBASIC18.15■□□□□ 0.5
VMP1Q96GC9 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
VMP1Q96GC9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VMP1Q96GC9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
VMP1Q96GC9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 FAM197Y1-201ENST00000421178 764 ntBASIC18.14■□□□□ 0.49
VMP1Q96GC9 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 TSPY7P-201ENST00000431358 1114 ntBASIC18.14■□□□□ 0.49
VMP1Q96GC9 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 BCL2-203ENST00000589955 5011 ntBASIC18.14■□□□□ 0.49
VMP1Q96GC9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VMP1Q96GC9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VMP1Q96GC9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 KRT16P1-201ENST00000399124 1418 ntBASIC18.13■□□□□ 0.49
VMP1Q96GC9 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VMP1Q96GC9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VMP1Q96GC9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
VMP1Q96GC9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VMP1Q96GC9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
VMP1Q96GC9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms