Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CLIP3Q96DZ5 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CLIP3Q96DZ5 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 AC010203.1-204ENST00000548782 407 ntBASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLIP3Q96DZ5 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 INGX-201ENST00000359239 846 ntBASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 SLC25A1P2-201ENST00000430693 912 ntBASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.25■□□□□ 0.51
CLIP3Q96DZ5 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 AL590326.2-201ENST00000625139 305 ntBASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.24■□□□□ 0.51
CLIP3Q96DZ5 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms