Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 AC004951.3-201ENST00000418645 1148 ntBASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 FITM1-202ENST00000559294 800 ntBASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 AC130371.2-201ENST00000619443 611 ntBASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 LINC01568-207ENST00000641790 1380 ntBASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
CHMP4CQ96CF2 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 TEX21P-204ENST00000641479 1693 ntBASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 AC098818.2-201ENST00000564925 2320 ntBASIC22.56■■□□□ 1.2
CHMP4CQ96CF2 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 AC120498.9-201ENST00000339021 3867 ntBASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 RCN1P1-201ENST00000400413 996 ntBASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 NAPSB-206ENST00000562112 1266 ntBASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 AC012306.2-201ENST00000609350 630 ntBASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 AC138932.1-201ENST00000534164 6830 ntBASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CHMP4CQ96CF2 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 KRT18P57-201ENST00000443599 1254 ntBASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC22.54■■□□□ 1.2
CHMP4CQ96CF2 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms