Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HPS3Q969F9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HPS3Q969F9 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HPS3Q969F9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.01■□□□□ 0.95
HPS3Q969F9 NUDT16P1-203ENST00000513809 620 ntBASIC21.01■□□□□ 0.95
HPS3Q969F9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.01■□□□□ 0.95
HPS3Q969F9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HPS3Q969F9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HPS3Q969F9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HPS3Q969F9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HPS3Q969F9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
HPS3Q969F9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
HPS3Q969F9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21■□□□□ 0.95
HPS3Q969F9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21■□□□□ 0.95
HPS3Q969F9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21■□□□□ 0.95
HPS3Q969F9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21■□□□□ 0.95
HPS3Q969F9 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
HPS3Q969F9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21■□□□□ 0.95
HPS3Q969F9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21■□□□□ 0.95
HPS3Q969F9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21■□□□□ 0.95
HPS3Q969F9 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21■□□□□ 0.95
HPS3Q969F9 FAM207BP-201ENST00000447172 505 ntBASIC21■□□□□ 0.95
HPS3Q969F9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21■□□□□ 0.95
HPS3Q969F9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21■□□□□ 0.95
HPS3Q969F9 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 REXO1L10P-201ENST00000615707 1290 ntBASIC21■□□□□ 0.95
HPS3Q969F9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21■□□□□ 0.95
HPS3Q969F9 REXO1L12P-201ENST00000622156 912 ntBASIC21■□□□□ 0.95
HPS3Q969F9 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21■□□□□ 0.95
HPS3Q969F9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HPS3Q969F9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
HPS3Q969F9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21■□□□□ 0.95
HPS3Q969F9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
HPS3Q969F9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.99■□□□□ 0.95
HPS3Q969F9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
HPS3Q969F9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
HPS3Q969F9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.99■□□□□ 0.95
HPS3Q969F9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.99■□□□□ 0.95
HPS3Q969F9 AC116562.2-201ENST00000507042 360 ntBASIC20.99■□□□□ 0.95
HPS3Q969F9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.99■□□□□ 0.95
HPS3Q969F9 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.99■□□□□ 0.95
HPS3Q969F9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 AL031598.1-201ENST00000561511 1773 ntBASIC20.99■□□□□ 0.95
HPS3Q969F9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.99■□□□□ 0.95
HPS3Q969F9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.99■□□□□ 0.95
HPS3Q969F9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HPS3Q969F9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.99■□□□□ 0.95
HPS3Q969F9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HPS3Q969F9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HPS3Q969F9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HPS3Q969F9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HPS3Q969F9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.98■□□□□ 0.95
HPS3Q969F9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.98■□□□□ 0.95
HPS3Q969F9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.98■□□□□ 0.95
HPS3Q969F9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.98■□□□□ 0.95
HPS3Q969F9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HPS3Q969F9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.98■□□□□ 0.95
HPS3Q969F9 CKBP1-201ENST00000565489 1086 ntBASIC20.98■□□□□ 0.95
HPS3Q969F9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HPS3Q969F9 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.98■□□□□ 0.95
HPS3Q969F9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.98■□□□□ 0.95
HPS3Q969F9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.98■□□□□ 0.95
HPS3Q969F9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HPS3Q969F9 FSCN1P1-201ENST00000568912 1481 ntBASIC20.98■□□□□ 0.95
HPS3Q969F9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HPS3Q969F9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.97■□□□□ 0.95
HPS3Q969F9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
HPS3Q969F9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
HPS3Q969F9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.97■□□□□ 0.95
HPS3Q969F9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HPS3Q969F9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms