Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 TP53-219ENST00000610538 2580 ntTSL 1 (best) BASIC14.37□□□□□ -0.118e-7■■■□□ 18.8
UPF1Q92900 TP53-228ENST00000635293 1883 ntTSL 513.42□□□□□ -0.268e-7■■■□□ 18.8
UPF1Q92900 TP53-208ENST00000504290 2331 ntTSL 1 (best) BASIC13.22□□□□□ -0.298e-7■■■□□ 18.8
UPF1Q92900 TP53-220ENST00000610623 2331 ntTSL 1 (best) BASIC13.22□□□□□ -0.298e-7■■■□□ 18.8
UPF1Q92900 TP53-201ENST00000269305 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.338e-7■■■□□ 18.8
UPF1Q92900 TP53-226ENST00000620739 2579 ntTSL 1 (best) BASIC12.96□□□□□ -0.338e-7■■■□□ 18.8
UPF1Q92900 TP53-204ENST00000420246 2653 ntTSL 1 (best) BASIC12.38□□□□□ -0.438e-7■■■□□ 18.8
UPF1Q92900 TP53-227ENST00000622645 2653 ntTSL 1 (best) BASIC12.38□□□□□ -0.438e-7■■■□□ 18.8
UPF1Q92900 TP53-218ENST00000610292 2639 ntTSL 1 (best) BASIC12.01□□□□□ -0.498e-7■■■□□ 18.8
UPF1Q92900 TP53-224ENST00000619186 2271 ntTSL 1 (best) BASIC11.88□□□□□ -0.518e-7■■■□□ 18.8
UPF1Q92900 TP53-209ENST00000504937 2271 ntTSL 1 (best) BASIC11.88□□□□□ -0.518e-7■■■□□ 18.8
UPF1Q92900 TP53-222ENST00000617185 2724 ntTSL 1 (best) BASIC11.59□□□□□ -0.558e-7■■■□□ 18.8
UPF1Q92900 TP53-223ENST00000618944 2404 ntTSL 1 (best) BASIC11.4□□□□□ -0.588e-7■■■□□ 18.8
UPF1Q92900 TP53-213ENST00000510385 2404 ntTSL 1 (best) BASIC11.4□□□□□ -0.588e-7■■■□□ 18.8
UPF1Q92900 TP53-205ENST00000445888 2506 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.658e-7■■■□□ 18.8
UPF1Q92900 TP53-225ENST00000619485 2506 ntTSL 1 (best) BASIC10.98□□□□□ -0.658e-7■■■□□ 18.8
UPF1Q92900 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.952e-8■■■□□ 18.8
UPF1Q92900 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.832e-6■■■□□ 18.8
UPF1Q92900 USP36-207ENST00000587010 607 ntTSL 320.73■□□□□ 0.916e-7■■■□□ 18.8
UPF1Q92900 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.776e-7■■■□□ 18.8
UPF1Q92900 USP36-221ENST00000592231 2479 ntTSL 215.09■□□□□ 0.016e-7■■■□□ 18.8
UPF1Q92900 USP36-219ENST00000591052 427 ntTSL 315.09■□□□□ 0.016e-7■■■□□ 18.8
UPF1Q92900 USP36-208ENST00000587379 606 ntTSL 314.99□□□□□ -0.016e-7■■■□□ 18.8
UPF1Q92900 USP36-214ENST00000589225 5885 ntTSL 1 (best)14.4□□□□□ -0.16e-7■■■□□ 18.8
UPF1Q92900 USP36-211ENST00000588130 602 ntTSL 213.3□□□□□ -0.286e-7■■■□□ 18.8
UPF1Q92900 ZNF580-206ENST00000592881 1019 ntTSL 330.77■■■□□ 2.521e-6■■■□□ 18.7
UPF1Q92900 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.321e-6■■■□□ 18.7
UPF1Q92900 CCDC106-208ENST00000592996 741 ntTSL 327.51■■□□□ 1.991e-6■■■□□ 18.7
UPF1Q92900 ZNF580-204ENST00000590190 335 ntTSL 327.4■■□□□ 1.981e-6■■■□□ 18.7
UPF1Q92900 ZNF581-202ENST00000585995 591 ntTSL 326.59■■□□□ 1.851e-6■■■□□ 18.7
UPF1Q92900 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.021e-6■■■□□ 18.7
UPF1Q92900 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 02e-6■■■□□ 18.7
UPF1Q92900 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.142e-6■■■□□ 18.7
UPF1Q92900 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.352e-6■■■□□ 18.7
UPF1Q92900 TMEM94-212ENST00000579898 2596 ntTSL 217.94■□□□□ 0.462e-6■■■□□ 18.7
UPF1Q92900 TMEM94-232ENST00000585105 5632 ntTSL 214.16□□□□□ -0.142e-6■■■□□ 18.7
UPF1Q92900 TMEM94-217ENST00000581085 5432 ntTSL 212.84□□□□□ -0.352e-6■■■□□ 18.7
UPF1Q92900 TMEM94-201ENST00000314256 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.362e-6■■■□□ 18.7
UPF1Q92900 LYZ-201ENST00000261267 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.392e-16■■■□□ 18.7
UPF1Q92900 FGFR4-216ENST00000514472 552 ntTSL 433.09■■■□□ 2.898e-11■■■□□ 18.7
UPF1Q92900 FGFR4-209ENST00000507708 476 ntTSL 329.77■■■□□ 2.368e-11■■■□□ 18.7
UPF1Q92900 FGFR4-212ENST00000510911 709 ntTSL 429.77■■■□□ 2.368e-11■■■□□ 18.7
UPF1Q92900 FGFR4-214ENST00000513166 594 ntTSL 428.89■■■□□ 2.228e-11■■■□□ 18.7
UPF1Q92900 FGFR4-204ENST00000426612 712 ntTSL 1 (best)28.5■■■□□ 2.158e-11■■■□□ 18.7
UPF1Q92900 FGFR4-208ENST00000503708 770 ntTSL 427.7■■■□□ 2.028e-11■■■□□ 18.7
UPF1Q92900 FGFR4-211ENST00000509511 1341 ntTSL 1 (best)26.79■■□□□ 1.888e-11■■■□□ 18.7
UPF1Q92900 FGFR4-205ENST00000430285 713 ntTSL 1 (best)25.22■■□□□ 1.638e-11■■■□□ 18.7
UPF1Q92900 ARHGAP19-SLIT1-202ENST00000479633 1876 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.482e-7■■■□□ 18.7
UPF1Q92900 ARHGAP19-201ENST00000358308 5390 ntTSL 1 (best) BASIC9.96□□□□□ -0.822e-7■■■□□ 18.7
UPF1Q92900 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.972e-7■■■□□ 18.7
UPF1Q92900 ARHGAP19-206ENST00000492211 5525 ntTSL 28.08□□□□□ -1.122e-7■■■□□ 18.7
UPF1Q92900 ARHGAP19-205ENST00000487035 4553 ntTSL 27.6□□□□□ -1.192e-7■■■□□ 18.7
UPF1Q92900 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.034e-7■■■□□ 18.7
UPF1Q92900 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.15■□□□□ 0.822e-7■■■□□ 18.7
UPF1Q92900 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.492e-7■■■□□ 18.7
UPF1Q92900 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC17.87■□□□□ 0.452e-7■■■□□ 18.7
UPF1Q92900 RNF121-207ENST00000526549 2375 ntTSL 217.5■□□□□ 0.392e-7■■■□□ 18.7
UPF1Q92900 RAB3GAP1-206ENST00000497080 446 ntTSL 512.38□□□□□ -0.435e-8■■■□□ 18.7
UPF1Q92900 RAB3GAP1-203ENST00000442034 4185 ntTSL 1 (best) BASIC9.62□□□□□ -0.875e-8■■■□□ 18.7
UPF1Q92900 SLC29A4-205ENST00000439491 805 ntTSL 321.85■■□□□ 1.092e-8■■■□□ 18.7
UPF1Q92900 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.111e-8■■■□□ 18.7
UPF1Q92900 CASC3-202ENST00000394114 2792 ntTSL 27.52□□□□□ -1.211e-8■■■□□ 18.7
UPF1Q92900 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.46e-8■■■□□ 18.7
UPF1Q92900 CCDC85C-206ENST00000557576 656 ntTSL 223.83■■□□□ 1.411e-7■■■□□ 18.7
UPF1Q92900 USP36-223ENST00000592326 406 ntTSL 516.94■□□□□ 0.31e-6■■■□□ 18.7
UPF1Q92900 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.1■■■□□ 2.573e-8■■■□□ 18.7
UPF1Q92900 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.333e-8■■■□□ 18.7
UPF1Q92900 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.283e-8■■■□□ 18.7
UPF1Q92900 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.87□□□□□ -0.031e-9■■■□□ 18.7
UPF1Q92900 PTPRU-207ENST00000492954 625 ntTSL 225.86■■□□□ 1.736e-10■■■□□ 18.7
UPF1Q92900 TMEM8A-202ENST00000424078 844 ntTSL 319.46■□□□□ 0.716e-10■■■□□ 18.7
UPF1Q92900 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.26■□□□□ 0.196e-10■■■□□ 18.7
UPF1Q92900 NICN1-207ENST00000497742 1743 ntTSL 514.55□□□□□ -0.086e-10■■■□□ 18.7
UPF1Q92900 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.162e-19■■■□□ 18.7
UPF1Q92900 PEG10-203ENST00000488574 2587 ntTSL 2 BASIC13.95□□□□□ -0.182e-19■■■□□ 18.7
UPF1Q92900 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.911e-7■■■□□ 18.7
UPF1Q92900 PML-213ENST00000565239 783 ntTSL 324.12■■□□□ 1.452e-6■■■□□ 18.7
UPF1Q92900 GPI-202ENST00000415930 4000 ntTSL 2 BASIC8.77□□□□□ -1.015e-8■■■□□ 18.6
UPF1Q92900 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 09e-8■■■□□ 18.6
UPF1Q92900 HACD2-203ENST00000471236 403 ntTSL 310.54□□□□□ -0.729e-8■■■□□ 18.6
UPF1Q92900 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC28.69■■■□□ 2.184e-7■■■□□ 18.6
UPF1Q92900 PLEKHB2-208ENST00000439822 4177 ntTSL 3 BASIC12.56□□□□□ -0.44e-7■■■□□ 18.6
UPF1Q92900 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC12.5□□□□□ -0.414e-7■■■□□ 18.6
UPF1Q92900 PLEKHB2-201ENST00000234115 4208 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.774e-7■■■□□ 18.6
UPF1Q92900 BCL2L2-204ENST00000556599 548 ntTSL 324.55■■□□□ 1.526e-8■■■□□ 18.6
UPF1Q92900 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.167e-8■■■□□ 18.6
UPF1Q92900 BCL2L2-PABPN1-202ENST00000556100 655 ntTSL 318.96■□□□□ 0.637e-8■■■□□ 18.6
UPF1Q92900 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.577e-8■■■□□ 18.6
UPF1Q92900 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.387e-8■■■□□ 18.6
UPF1Q92900 STK11-204ENST00000585851 505 ntTSL 320.37■□□□□ 0.854e-6■■■□□ 18.6
UPF1Q92900 STK11-209ENST00000593219 637 ntTSL 319.73■□□□□ 0.754e-6■■■□□ 18.6
UPF1Q92900 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC32.32■■■□□ 2.762e-9■■■□□ 18.6
UPF1Q92900 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC32.18■■■□□ 2.742e-9■■■□□ 18.6
UPF1Q92900 SPR-202ENST00000498749 947 ntTSL 330.74■■■□□ 2.512e-9■■■□□ 18.6
UPF1Q92900 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.512e-9■■■□□ 18.6
UPF1Q92900 TOR1A-204ENST00000474192 947 ntTSL 320.2■□□□□ 0.822e-9■■■□□ 18.6
UPF1Q92900 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.23□□□□□ -0.292e-9■■■□□ 18.6
UPF1Q92900 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC35.95■■■■□ 3.352e-11■■■□□ 18.6
UPF1Q92900 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC33.18■■■□□ 2.92e-11■■■□□ 18.6
UPF1Q92900 RAD51-204ENST00000525066 1545 ntTSL 531.35■■■□□ 2.612e-11■■■□□ 18.6
Retrieved 100 of 15,879 protein–RNA pairs in 132 ms