Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4AQ8WYN0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 TSPY21P-201ENST00000433481 731 ntBASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 RNA5SP413-201ENST00000516373 109 ntBASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 AC026471.1-201ENST00000564629 3026 ntBASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.67■□□□□ 0.74
ATG4AQ8WYN0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 AC005332.8-201ENST00000622750 2735 ntBASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 AP003097.1-201ENST00000530657 1135 ntBASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 MTDHP1-201ENST00000605323 784 ntBASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 AC069544.1-201ENST00000609399 999 ntBASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4AQ8WYN0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 KRT8P41-201ENST00000533985 1514 ntBASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4AQ8WYN0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4AQ8WYN0 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
ATG4AQ8WYN0 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4AQ8WYN0 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4AQ8WYN0 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4AQ8WYN0 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4AQ8WYN0 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4AQ8WYN0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4AQ8WYN0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms