Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RTL3Q8N8U3 CYP2D8P-201ENST00000433633 1490 ntBASIC19.46■□□□□ 0.71
RTL3Q8N8U3 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.46■□□□□ 0.71
RTL3Q8N8U3 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RTL3Q8N8U3 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RTL3Q8N8U3 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RTL3Q8N8U3 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.45■□□□□ 0.7
RTL3Q8N8U3 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
RTL3Q8N8U3 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 TSPY14P-201ENST00000303979 915 ntBASIC19.44■□□□□ 0.7
RTL3Q8N8U3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 AC087499.1-201ENST00000418141 1075 ntBASIC19.44■□□□□ 0.7
RTL3Q8N8U3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 NAPSB-206ENST00000562112 1266 ntBASIC19.44■□□□□ 0.7
RTL3Q8N8U3 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 AL023803.3-201ENST00000615559 522 ntBASIC19.44■□□□□ 0.7
RTL3Q8N8U3 AC010947.1-201ENST00000623454 693 ntBASIC19.44■□□□□ 0.7
RTL3Q8N8U3 AC073912.3-201ENST00000624414 853 ntBASIC19.44■□□□□ 0.7
RTL3Q8N8U3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.44■□□□□ 0.7
RTL3Q8N8U3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.43■□□□□ 0.7
RTL3Q8N8U3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.43■□□□□ 0.7
RTL3Q8N8U3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 EGLN1P1-201ENST00000531623 762 ntBASIC19.43■□□□□ 0.7
RTL3Q8N8U3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
RTL3Q8N8U3 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 BX323043.1-201ENST00000641006 1765 ntBASIC19.42■□□□□ 0.7
RTL3Q8N8U3 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms