Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 AC141586.3-201ENST00000562166 1838 ntBASIC11.87□□□□□ -0.51
LINC00643Q86TS7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 LINC00554-201ENST00000564841 3011 ntBASIC11.87□□□□□ -0.51
LINC00643Q86TS7 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 DPP3P2-201ENST00000416030 1696 ntBASIC11.87□□□□□ -0.51
LINC00643Q86TS7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00643Q86TS7 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 DUX4L29-201ENST00000425409 679 ntBASIC11.86□□□□□ -0.51
LINC00643Q86TS7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00643Q86TS7 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms