Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.27■□□□□ 0.68
USP39Q53GS9 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.27■□□□□ 0.68
USP39Q53GS9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
USP39Q53GS9 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.27■□□□□ 0.68
USP39Q53GS9 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.27■□□□□ 0.68
USP39Q53GS9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.27■□□□□ 0.68
USP39Q53GS9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.27■□□□□ 0.68
USP39Q53GS9 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.27■□□□□ 0.68
USP39Q53GS9 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.27■□□□□ 0.68
USP39Q53GS9 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP39Q53GS9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP39Q53GS9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP39Q53GS9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
USP39Q53GS9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.26■□□□□ 0.67
USP39Q53GS9 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.26■□□□□ 0.67
USP39Q53GS9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 LINC01465-201ENST00000408887 1940 ntBASIC19.26■□□□□ 0.67
USP39Q53GS9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.26■□□□□ 0.67
USP39Q53GS9 AC026396.1-201ENST00000419388 421 ntBASIC19.26■□□□□ 0.67
USP39Q53GS9 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
USP39Q53GS9 KRT18P38-201ENST00000449496 1282 ntBASIC19.26■□□□□ 0.67
USP39Q53GS9 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.26■□□□□ 0.67
USP39Q53GS9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP39Q53GS9 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.26■□□□□ 0.67
USP39Q53GS9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.26■□□□□ 0.67
USP39Q53GS9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
USP39Q53GS9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
USP39Q53GS9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP39Q53GS9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.26■□□□□ 0.67
USP39Q53GS9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
USP39Q53GS9 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.25■□□□□ 0.67
USP39Q53GS9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.25■□□□□ 0.67
USP39Q53GS9 KRT8P41-201ENST00000533985 1514 ntBASIC19.25■□□□□ 0.67
USP39Q53GS9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.25■□□□□ 0.67
USP39Q53GS9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.25■□□□□ 0.67
USP39Q53GS9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.25■□□□□ 0.67
USP39Q53GS9 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.25■□□□□ 0.67
USP39Q53GS9 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.25■□□□□ 0.67
USP39Q53GS9 AC112907.2-201ENST00000448639 330 ntBASIC19.25■□□□□ 0.67
USP39Q53GS9 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.25■□□□□ 0.67
USP39Q53GS9 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.25■□□□□ 0.67
USP39Q53GS9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.25■□□□□ 0.67
USP39Q53GS9 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.25■□□□□ 0.67
USP39Q53GS9 NEK4P2-201ENST00000580004 1012 ntBASIC19.25■□□□□ 0.67
USP39Q53GS9 CLEC4GP1-201ENST00000596555 870 ntBASIC19.25■□□□□ 0.67
USP39Q53GS9 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
USP39Q53GS9 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.25■□□□□ 0.67
USP39Q53GS9 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP39Q53GS9 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.25■□□□□ 0.67
USP39Q53GS9 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP39Q53GS9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.24■□□□□ 0.67
USP39Q53GS9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.24■□□□□ 0.67
USP39Q53GS9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.24■□□□□ 0.67
USP39Q53GS9 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 ZNF444P1-201ENST00000559497 298 ntBASIC19.24■□□□□ 0.67
USP39Q53GS9 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.24■□□□□ 0.67
USP39Q53GS9 AL691432.3-201ENST00000621860 400 ntBASIC19.24■□□□□ 0.67
USP39Q53GS9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
USP39Q53GS9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
USP39Q53GS9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms