Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDH1Q08174 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PCDH1Q08174 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PCDH1Q08174 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDH1Q08174 AC004408.2-201ENST00000623613 2777 ntBASIC18.29■□□□□ 0.52
PCDH1Q08174 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
PCDH1Q08174 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PCDH1Q08174 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.29■□□□□ 0.52
PCDH1Q08174 AC012618.2-201ENST00000428058 849 ntBASIC18.29■□□□□ 0.52
PCDH1Q08174 B3GAT3P1-201ENST00000471720 806 ntBASIC18.29■□□□□ 0.52
PCDH1Q08174 AC011506.1-201ENST00000474329 610 ntBASIC18.29■□□□□ 0.52
PCDH1Q08174 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 AC116562.2-201ENST00000507042 360 ntBASIC18.29■□□□□ 0.52
PCDH1Q08174 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.29■□□□□ 0.52
PCDH1Q08174 CKBP1-201ENST00000565489 1086 ntBASIC18.29■□□□□ 0.52
PCDH1Q08174 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDH1Q08174 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDH1Q08174 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDH1Q08174 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDH1Q08174 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PCDH1Q08174 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH1Q08174 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.28■□□□□ 0.52
PCDH1Q08174 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
PCDH1Q08174 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDH1Q08174 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PCDH1Q08174 FSCN1P1-201ENST00000568912 1481 ntBASIC18.28■□□□□ 0.52
PCDH1Q08174 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PCDH1Q08174 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDH1Q08174 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.28■□□□□ 0.52
PCDH1Q08174 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDH1Q08174 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.28■□□□□ 0.52
PCDH1Q08174 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PCDH1Q08174 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDH1Q08174 AP000692.2-201ENST00000608391 879 ntBASIC18.28■□□□□ 0.52
PCDH1Q08174 MIR6786-201ENST00000616843 113 ntBASIC18.28■□□□□ 0.52
PCDH1Q08174 AC011298.2-201ENST00000617989 482 ntBASIC18.28■□□□□ 0.52
PCDH1Q08174 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDH1Q08174 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDH1Q08174 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDH1Q08174 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
PCDH1Q08174 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH1Q08174 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PCDH1Q08174 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCDH1Q08174 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCDH1Q08174 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PCDH1Q08174 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
PCDH1Q08174 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
PCDH1Q08174 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCDH1Q08174 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PCDH1Q08174 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH1Q08174 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDH1Q08174 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDH1Q08174 RPS2P55-201ENST00000397318 883 ntBASIC18.27■□□□□ 0.52
PCDH1Q08174 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms