Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC13.72□□□□□ -0.21
PRKDCP78527 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC13.72□□□□□ -0.21
PRKDCP78527 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.72□□□□□ -0.21
PRKDCP78527 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
PRKDCP78527 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC13.72□□□□□ -0.21
PRKDCP78527 AL023284.2-201ENST00000405850 579 ntBASIC13.72□□□□□ -0.21
PRKDCP78527 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC13.72□□□□□ -0.21
PRKDCP78527 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.72□□□□□ -0.21
PRKDCP78527 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
PRKDCP78527 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC13.72□□□□□ -0.21
PRKDCP78527 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
PRKDCP78527 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.72□□□□□ -0.21
PRKDCP78527 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.72□□□□□ -0.21
PRKDCP78527 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
PRKDCP78527 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC13.72□□□□□ -0.21
PRKDCP78527 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
PRKDCP78527 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.72□□□□□ -0.21
PRKDCP78527 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.72□□□□□ -0.21
PRKDCP78527 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.72□□□□□ -0.21
PRKDCP78527 AC083906.6-201ENST00000641366 219 ntBASIC13.72□□□□□ -0.21
PRKDCP78527 AC079781.4-201ENST00000641908 219 ntBASIC13.72□□□□□ -0.21
PRKDCP78527 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC13.72□□□□□ -0.21
PRKDCP78527 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC13.72□□□□□ -0.21
PRKDCP78527 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
PRKDCP78527 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
PRKDCP78527 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
PRKDCP78527 POM121L3P-201ENST00000419331 1163 ntBASIC13.71□□□□□ -0.21
PRKDCP78527 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.71□□□□□ -0.21
PRKDCP78527 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.71□□□□□ -0.21
PRKDCP78527 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 RNA5SP415-201ENST00000517246 115 ntBASIC13.71□□□□□ -0.21
PRKDCP78527 FP700111.2-201ENST00000619190 1892 ntBASIC13.71□□□□□ -0.21
PRKDCP78527 TREX1-205ENST00000625293 1783 ntBASIC13.71□□□□□ -0.21
PRKDCP78527 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
PRKDCP78527 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 ALG1L5P-201ENST00000482043 771 ntBASIC13.71□□□□□ -0.21
PRKDCP78527 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.71□□□□□ -0.21
PRKDCP78527 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
PRKDCP78527 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
PRKDCP78527 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
PRKDCP78527 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PRKDCP78527 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC13.71□□□□□ -0.21
PRKDCP78527 IGHV3-41-201ENST00000613121 348 ntBASIC13.71□□□□□ -0.21
PRKDCP78527 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
PRKDCP78527 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
PRKDCP78527 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
PRKDCP78527 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
PRKDCP78527 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
PRKDCP78527 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
PRKDCP78527 AP001269.4-201ENST00000609611 512 ntBASIC13.71□□□□□ -0.22
PRKDCP78527 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.7□□□□□ -0.22
PRKDCP78527 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC13.7□□□□□ -0.22
PRKDCP78527 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.7□□□□□ -0.22
PRKDCP78527 YBX1P5-201ENST00000509441 847 ntBASIC13.7□□□□□ -0.22
PRKDCP78527 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.7□□□□□ -0.22
PRKDCP78527 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC13.7□□□□□ -0.22
PRKDCP78527 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13.7□□□□□ -0.22
PRKDCP78527 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.7□□□□□ -0.22
PRKDCP78527 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 GALC-202ENST00000393568 2054 ntTSL 2 BASIC13.7□□□□□ -0.22
PRKDCP78527 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 AC132008.2-207ENST00000454517 770 ntBASIC13.7□□□□□ -0.22
PRKDCP78527 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PRKDCP78527 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.7□□□□□ -0.22
PRKDCP78527 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.7□□□□□ -0.22
PRKDCP78527 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms