Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.57■■□□□ 1.04
CCNA1P78396 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCNA1P78396 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCNA1P78396 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.57■■□□□ 1.04
CCNA1P78396 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.57■■□□□ 1.04
CCNA1P78396 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCNA1P78396 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.57■■□□□ 1.04
CCNA1P78396 AL391807.1-203ENST00000604392 2365 ntBASIC21.56■■□□□ 1.04
CCNA1P78396 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCNA1P78396 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCNA1P78396 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCNA1P78396 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CCNA1P78396 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.56■■□□□ 1.04
CCNA1P78396 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.56■■□□□ 1.04
CCNA1P78396 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
CCNA1P78396 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.56■■□□□ 1.04
CCNA1P78396 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCNA1P78396 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCNA1P78396 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.56■■□□□ 1.04
CCNA1P78396 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCNA1P78396 KRT18P1-202ENST00000452408 1331 ntBASIC21.55■■□□□ 1.04
CCNA1P78396 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.55■■□□□ 1.04
CCNA1P78396 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 KRT8P7-201ENST00000533003 1432 ntBASIC21.55■■□□□ 1.04
CCNA1P78396 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.55■■□□□ 1.04
CCNA1P78396 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
CCNA1P78396 AL845331.1-201ENST00000424978 1190 ntBASIC21.55■■□□□ 1.04
CCNA1P78396 TSPY22P-201ENST00000427496 604 ntBASIC21.55■■□□□ 1.04
CCNA1P78396 AC246785.2-201ENST00000432512 513 ntBASIC21.55■■□□□ 1.04
CCNA1P78396 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CCNA1P78396 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.55■■□□□ 1.04
CCNA1P78396 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC21.55■■□□□ 1.04
CCNA1P78396 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC21.55■■□□□ 1.04
CCNA1P78396 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.55■■□□□ 1.04
CCNA1P78396 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CCNA1P78396 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.55■■□□□ 1.04
CCNA1P78396 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CCNA1P78396 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.55■■□□□ 1.04
CCNA1P78396 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.55■■□□□ 1.04
CCNA1P78396 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.55■■□□□ 1.04
CCNA1P78396 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCNA1P78396 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.54■■□□□ 1.04
CCNA1P78396 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
CCNA1P78396 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.54■■□□□ 1.04
CCNA1P78396 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.54■■□□□ 1.04
CCNA1P78396 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.54■■□□□ 1.04
CCNA1P78396 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CCNA1P78396 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
CCNA1P78396 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
CCNA1P78396 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCNA1P78396 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 AC092667.1-201ENST00000434301 2586 ntBASIC21.53■■□□□ 1.04
CCNA1P78396 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CCNA1P78396 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.53■■□□□ 1.04
CCNA1P78396 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC21.53■■□□□ 1.04
CCNA1P78396 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.53■■□□□ 1.04
CCNA1P78396 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 AL109659.2-201ENST00000606809 1674 ntBASIC21.53■■□□□ 1.04
CCNA1P78396 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCNA1P78396 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.53■■□□□ 1.04
CCNA1P78396 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNA1P78396 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNA1P78396 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNA1P78396 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.52■■□□□ 1.04
CCNA1P78396 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCNA1P78396 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CCNA1P78396 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCNA1P78396 KRT17P6-201ENST00000453795 1220 ntBASIC21.52■■□□□ 1.04
CCNA1P78396 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCNA1P78396 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms