Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.55■□□□□ 0.4
RNF4P78317 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
RNF4P78317 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.55■□□□□ 0.4
RNF4P78317 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF4P78317 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF4P78317 HMGA1P5-201ENST00000412453 271 ntBASIC17.55■□□□□ 0.4
RNF4P78317 AC113347.1-201ENST00000413321 391 ntBASIC17.55■□□□□ 0.4
RNF4P78317 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.55■□□□□ 0.4
RNF4P78317 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
RNF4P78317 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF4P78317 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF4P78317 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF4P78317 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RNF4P78317 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF4P78317 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF4P78317 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF4P78317 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RNF4P78317 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF4P78317 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF4P78317 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF4P78317 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF4P78317 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF4P78317 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF4P78317 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF4P78317 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF4P78317 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RNF4P78317 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF4P78317 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.54■□□□□ 0.4
RNF4P78317 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF4P78317 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.54■□□□□ 0.4
RNF4P78317 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF4P78317 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RNF4P78317 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RNF4P78317 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF4P78317 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RNF4P78317 KRT8P3-201ENST00000519669 1449 ntBASIC17.54■□□□□ 0.4
RNF4P78317 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
RNF4P78317 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
RNF4P78317 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
RNF4P78317 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.53■□□□□ 0.4
RNF4P78317 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
RNF4P78317 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RNF4P78317 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
RNF4P78317 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.53■□□□□ 0.4
RNF4P78317 AL137013.1-201ENST00000432946 1228 ntBASIC17.53■□□□□ 0.4
RNF4P78317 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.53■□□□□ 0.4
RNF4P78317 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
RNF4P78317 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.53■□□□□ 0.4
RNF4P78317 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.53■□□□□ 0.4
RNF4P78317 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
RNF4P78317 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.53■□□□□ 0.4
RNF4P78317 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RNF4P78317 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RNF4P78317 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF4P78317 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
RNF4P78317 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.52■□□□□ 0.4
RNF4P78317 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.52■□□□□ 0.4
RNF4P78317 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.52■□□□□ 0.4
RNF4P78317 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
RNF4P78317 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RNF4P78317 AC005521.1-201ENST00000393351 872 ntBASIC17.52■□□□□ 0.4
RNF4P78317 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.52■□□□□ 0.4
RNF4P78317 LIN28AP1-201ENST00000429574 405 ntBASIC17.52■□□□□ 0.4
RNF4P78317 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms