Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 LETM1P2-201ENST00000597330 2178 ntBASIC17.38■□□□□ 0.37
CDH11P55287 TFP1-202ENST00000475455 1573 ntBASIC17.38■□□□□ 0.37
CDH11P55287 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 MIR718-201ENST00000390190 70 ntBASIC17.38■□□□□ 0.37
CDH11P55287 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.38■□□□□ 0.37
CDH11P55287 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.38■□□□□ 0.37
CDH11P55287 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.38■□□□□ 0.37
CDH11P55287 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 AC120498.8-201ENST00000614275 531 ntBASIC17.38■□□□□ 0.37
CDH11P55287 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 WIZP1-201ENST00000531444 2299 ntBASIC17.38■□□□□ 0.37
CDH11P55287 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
CDH11P55287 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
CDH11P55287 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDH11P55287 AL031598.1-201ENST00000561511 1773 ntBASIC17.38■□□□□ 0.37
CDH11P55287 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CDH11P55287 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.37■□□□□ 0.37
CDH11P55287 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.37■□□□□ 0.37
CDH11P55287 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CDH11P55287 AC239809.2-201ENST00000415381 517 ntBASIC17.37■□□□□ 0.37
CDH11P55287 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.37■□□□□ 0.37
CDH11P55287 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.37■□□□□ 0.37
CDH11P55287 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.37■□□□□ 0.37
CDH11P55287 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.37■□□□□ 0.37
CDH11P55287 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CDH11P55287 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.37■□□□□ 0.37
CDH11P55287 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.37■□□□□ 0.37
CDH11P55287 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.37■□□□□ 0.37
CDH11P55287 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.37■□□□□ 0.37
CDH11P55287 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDH11P55287 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.37■□□□□ 0.37
CDH11P55287 AC090164.3-201ENST00000610780 2143 ntBASIC17.36■□□□□ 0.37
CDH11P55287 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 Z98044.1-201ENST00000632503 1764 ntBASIC17.36■□□□□ 0.37
CDH11P55287 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.36■□□□□ 0.37
CDH11P55287 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.36■□□□□ 0.37
CDH11P55287 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CDH11P55287 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH11P55287 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CDH11P55287 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CDH11P55287 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH11P55287 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH11P55287 AC093525.10-201ENST00000625130 1569 ntBASIC17.36■□□□□ 0.37
CDH11P55287 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH11P55287 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms