Protein–RNA interactions for Protein: P49662

CASP4, Caspase-4, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4P49662 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CASP4P49662 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.69■□□□□ 0.9
CASP4P49662 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASP4P49662 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.69■□□□□ 0.9
CASP4P49662 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASP4P49662 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.68■□□□□ 0.9
CASP4P49662 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.68■□□□□ 0.9
CASP4P49662 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.68■□□□□ 0.9
CASP4P49662 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CASP4P49662 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CASP4P49662 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.68■□□□□ 0.9
CASP4P49662 AL355075.4-201ENST00000554988 638 ntBASIC20.68■□□□□ 0.9
CASP4P49662 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.68■□□□□ 0.9
CASP4P49662 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.68■□□□□ 0.9
CASP4P49662 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASP4P49662 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.68■□□□□ 0.9
CASP4P49662 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.68■□□□□ 0.9
CASP4P49662 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.68■□□□□ 0.9
CASP4P49662 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.67■□□□□ 0.9
CASP4P49662 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 AL512353.2-201ENST00000448759 1962 ntBASIC20.67■□□□□ 0.9
CASP4P49662 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CASP4P49662 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.67■□□□□ 0.9
CASP4P49662 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.67■□□□□ 0.9
CASP4P49662 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.67■□□□□ 0.9
CASP4P49662 MIR4785-201ENST00000585005 73 ntBASIC20.67■□□□□ 0.9
CASP4P49662 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.67■□□□□ 0.9
CASP4P49662 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.67■□□□□ 0.9
CASP4P49662 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CASP4P49662 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.67■□□□□ 0.9
CASP4P49662 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CASP4P49662 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CASP4P49662 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CASP4P49662 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.66■□□□□ 0.9
CASP4P49662 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.66■□□□□ 0.9
CASP4P49662 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CASP4P49662 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.66■□□□□ 0.9
CASP4P49662 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.66■□□□□ 0.9
CASP4P49662 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.66■□□□□ 0.9
CASP4P49662 SLC25A1P4-201ENST00000567977 778 ntBASIC20.66■□□□□ 0.9
CASP4P49662 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
CASP4P49662 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CASP4P49662 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CASP4P49662 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CASP4P49662 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CASP4P49662 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 AL031598.1-201ENST00000561511 1773 ntBASIC20.66■□□□□ 0.9
CASP4P49662 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.66■□□□□ 0.9
CASP4P49662 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CASP4P49662 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CASP4P49662 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 AC079598.2-202ENST00000546624 1451 ntBASIC20.65■□□□□ 0.9
CASP4P49662 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.65■□□□□ 0.9
CASP4P49662 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.65■□□□□ 0.9
CASP4P49662 AC096733.2-201ENST00000609937 1394 ntBASIC20.65■□□□□ 0.9
CASP4P49662 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.65■□□□□ 0.9
CASP4P49662 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.65■□□□□ 0.9
CASP4P49662 RBM17P1-201ENST00000453646 1190 ntBASIC20.65■□□□□ 0.9
CASP4P49662 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.65■□□□□ 0.9
CASP4P49662 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.65■□□□□ 0.9
CASP4P49662 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms