Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CXCL12P48061 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CXCL12P48061 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.89■□□□□ 0.61
CXCL12P48061 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.89■□□□□ 0.61
CXCL12P48061 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.89■□□□□ 0.61
CXCL12P48061 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.89■□□□□ 0.61
CXCL12P48061 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
CXCL12P48061 AL353801.3-201ENST00000609898 542 ntBASIC18.89■□□□□ 0.61
CXCL12P48061 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.89■□□□□ 0.61
CXCL12P48061 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CXCL12P48061 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CXCL12P48061 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CXCL12P48061 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CXCL12P48061 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
CXCL12P48061 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.89■□□□□ 0.61
CXCL12P48061 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CXCL12P48061 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 AL512408.1-201ENST00000569378 2000 ntBASIC18.88■□□□□ 0.61
CXCL12P48061 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.88■□□□□ 0.61
CXCL12P48061 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.88■□□□□ 0.61
CXCL12P48061 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.88■□□□□ 0.61
CXCL12P48061 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 MRPL3P1-201ENST00000400109 1033 ntBASIC18.88■□□□□ 0.61
CXCL12P48061 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.88■□□□□ 0.61
CXCL12P48061 AC005332.3-201ENST00000589904 676 ntBASIC18.88■□□□□ 0.61
CXCL12P48061 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.88■□□□□ 0.61
CXCL12P48061 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.88■□□□□ 0.61
CXCL12P48061 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.88■□□□□ 0.61
CXCL12P48061 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.88■□□□□ 0.61
CXCL12P48061 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.88■□□□□ 0.61
CXCL12P48061 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.88■□□□□ 0.61
CXCL12P48061 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.88■□□□□ 0.61
CXCL12P48061 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CXCL12P48061 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 SDHAP1-207ENST00000440850 2000 ntBASIC18.88■□□□□ 0.61
CXCL12P48061 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CXCL12P48061 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.87■□□□□ 0.61
CXCL12P48061 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CXCL12P48061 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 KRT16P4-201ENST00000453883 522 ntBASIC18.87■□□□□ 0.61
CXCL12P48061 AP003733.1-201ENST00000491725 852 ntBASIC18.87■□□□□ 0.61
CXCL12P48061 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.87■□□□□ 0.61
CXCL12P48061 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CXCL12P48061 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.87■□□□□ 0.61
CXCL12P48061 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.87■□□□□ 0.61
CXCL12P48061 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CXCL12P48061 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.87■□□□□ 0.61
CXCL12P48061 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.87■□□□□ 0.61
CXCL12P48061 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CXCL12P48061 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CXCL12P48061 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 KRT8P7-201ENST00000533003 1432 ntBASIC18.86■□□□□ 0.61
CXCL12P48061 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.86■□□□□ 0.61
CXCL12P48061 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.86■□□□□ 0.61
CXCL12P48061 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.86■□□□□ 0.61
CXCL12P48061 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.86■□□□□ 0.61
CXCL12P48061 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.86■□□□□ 0.61
CXCL12P48061 Z69720.1-201ENST00000601483 472 ntBASIC18.86■□□□□ 0.61
CXCL12P48061 AC099336.1-202ENST00000602961 463 ntBASIC18.86■□□□□ 0.61
CXCL12P48061 AC120114.3-201ENST00000611923 658 ntBASIC18.86■□□□□ 0.61
CXCL12P48061 BX640515.1-201ENST00000617215 977 ntBASIC18.86■□□□□ 0.61
CXCL12P48061 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CXCL12P48061 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.85■□□□□ 0.61
CXCL12P48061 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CXCL12P48061 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.85■□□□□ 0.61
CXCL12P48061 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.85■□□□□ 0.61
CXCL12P48061 AC073314.1-201ENST00000568729 2216 ntBASIC18.85■□□□□ 0.61
CXCL12P48061 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.85■□□□□ 0.61
CXCL12P48061 LINC00167-201ENST00000530583 1419 ntBASIC18.85■□□□□ 0.61
CXCL12P48061 HLA-A-201ENST00000376802 1334 ntBASIC18.85■□□□□ 0.61
CXCL12P48061 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CXCL12P48061 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CXCL12P48061 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CXCL12P48061 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.85■□□□□ 0.61
CXCL12P48061 KRT18P23-201ENST00000435622 1283 ntBASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms