Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
RFC3P40938 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.35■□□□□ 0.37
RFC3P40938 PRSS44-201ENST00000515154 1146 ntBASIC17.35■□□□□ 0.37
RFC3P40938 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.35■□□□□ 0.37
RFC3P40938 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.35■□□□□ 0.37
RFC3P40938 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.35■□□□□ 0.37
RFC3P40938 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.35■□□□□ 0.37
RFC3P40938 AC141257.4-201ENST00000634557 245 ntBASIC17.35■□□□□ 0.37
RFC3P40938 AC136944.6-201ENST00000634818 245 ntBASIC17.35■□□□□ 0.37
RFC3P40938 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.35■□□□□ 0.37
RFC3P40938 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
RFC3P40938 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
RFC3P40938 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFC3P40938 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
RFC3P40938 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RFC3P40938 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.34■□□□□ 0.37
RFC3P40938 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.34■□□□□ 0.37
RFC3P40938 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.34■□□□□ 0.37
RFC3P40938 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.34■□□□□ 0.37
RFC3P40938 KRT8P45-201ENST00000414328 1447 ntBASIC17.34■□□□□ 0.37
RFC3P40938 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.34■□□□□ 0.37
RFC3P40938 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 CA15P1-201ENST00000481698 905 ntBASIC17.34■□□□□ 0.37
RFC3P40938 YBX1P2-201ENST00000489612 999 ntBASIC17.34■□□□□ 0.37
RFC3P40938 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.34■□□□□ 0.37
RFC3P40938 AC022616.7-201ENST00000525383 220 ntBASIC17.34■□□□□ 0.37
RFC3P40938 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.34■□□□□ 0.37
RFC3P40938 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 AFG3L1P-217ENST00000557444 2447 ntBASIC17.34■□□□□ 0.37
RFC3P40938 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.34■□□□□ 0.37
RFC3P40938 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RFC3P40938 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
RFC3P40938 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFC3P40938 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.37
RFC3P40938 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.33■□□□□ 0.37
RFC3P40938 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFC3P40938 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.33■□□□□ 0.36
RFC3P40938 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
RFC3P40938 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.33■□□□□ 0.36
RFC3P40938 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
RFC3P40938 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
RFC3P40938 TSPY23P-201ENST00000440136 739 ntBASIC17.33■□□□□ 0.36
RFC3P40938 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.33■□□□□ 0.36
RFC3P40938 COX11P1-201ENST00000489116 835 ntBASIC17.33■□□□□ 0.36
RFC3P40938 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
RFC3P40938 AL023973.1-201ENST00000624619 620 ntBASIC17.33■□□□□ 0.36
RFC3P40938 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
RFC3P40938 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
RFC3P40938 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFC3P40938 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.33■□□□□ 0.36
RFC3P40938 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
RFC3P40938 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.33■□□□□ 0.36
RFC3P40938 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RFC3P40938 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.32■□□□□ 0.36
RFC3P40938 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms