Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HOXA9P31269 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXA9P31269 MIR3917-201ENST00000580971 93 ntBASIC19.74■□□□□ 0.75
HOXA9P31269 AC092329.2-201ENST00000598402 547 ntBASIC19.74■□□□□ 0.75
HOXA9P31269 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXA9P31269 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 AC093525.10-201ENST00000625130 1569 ntBASIC19.74■□□□□ 0.75
HOXA9P31269 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXA9P31269 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXA9P31269 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HOXA9P31269 AC016734.2-201ENST00000624325 1377 ntBASIC19.73■□□□□ 0.75
HOXA9P31269 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 AL109659.2-201ENST00000606809 1674 ntBASIC19.73■□□□□ 0.75
HOXA9P31269 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HOXA9P31269 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.73■□□□□ 0.75
HOXA9P31269 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
HOXA9P31269 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXA9P31269 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.73■□□□□ 0.75
HOXA9P31269 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
HOXA9P31269 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.73■□□□□ 0.75
HOXA9P31269 MIR3652-201ENST00000579335 131 ntBASIC19.73■□□□□ 0.75
HOXA9P31269 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.73■□□□□ 0.75
HOXA9P31269 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXA9P31269 AC012313.10-201ENST00000623509 926 ntBASIC19.73■□□□□ 0.75
HOXA9P31269 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXA9P31269 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXA9P31269 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
HOXA9P31269 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
HOXA9P31269 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HOXA9P31269 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA9P31269 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.72■□□□□ 0.75
HOXA9P31269 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
HOXA9P31269 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HOXA9P31269 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HOXA9P31269 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXA9P31269 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXA9P31269 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.72■□□□□ 0.75
HOXA9P31269 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.72■□□□□ 0.75
HOXA9P31269 AL162741.1-201ENST00000565563 1558 ntBASIC19.72■□□□□ 0.75
HOXA9P31269 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.72■□□□□ 0.75
HOXA9P31269 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXA9P31269 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 AC079602.3-201ENST00000623931 403 ntBASIC19.72■□□□□ 0.75
HOXA9P31269 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXA9P31269 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
HOXA9P31269 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXA9P31269 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA9P31269 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXA9P31269 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HOXA9P31269 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXA9P31269 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HOXA9P31269 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXA9P31269 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXA9P31269 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 MIR662-201ENST00000384847 95 ntBASIC19.71■□□□□ 0.75
HOXA9P31269 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXA9P31269 KRT8P26-201ENST00000534154 1276 ntBASIC19.71■□□□□ 0.75
HOXA9P31269 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXA9P31269 MIR3180-1-201ENST00000580374 94 ntBASIC19.71■□□□□ 0.75
HOXA9P31269 MIR3180-3-201ENST00000584616 94 ntBASIC19.71■□□□□ 0.75
HOXA9P31269 AL136038.4-201ENST00000603606 1261 ntBASIC19.71■□□□□ 0.75
HOXA9P31269 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXA9P31269 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA9P31269 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms