Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.77■■□□□ 1.08
SMARCA1P28370 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.77■■□□□ 1.08
SMARCA1P28370 AC083906.6-201ENST00000641366 219 ntBASIC21.77■■□□□ 1.08
SMARCA1P28370 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
SMARCA1P28370 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SMARCA1P28370 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SMARCA1P28370 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
SMARCA1P28370 AL049812.1-201ENST00000432563 2267 ntBASIC21.77■■□□□ 1.08
SMARCA1P28370 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA1P28370 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
SMARCA1P28370 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.77■■□□□ 1.07
SMARCA1P28370 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.77■■□□□ 1.07
SMARCA1P28370 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SMARCA1P28370 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.76■■□□□ 1.07
SMARCA1P28370 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.76■■□□□ 1.07
SMARCA1P28370 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SMARCA1P28370 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
SMARCA1P28370 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.76■■□□□ 1.07
SMARCA1P28370 FAM210CP-201ENST00000445714 574 ntBASIC21.76■■□□□ 1.07
SMARCA1P28370 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.76■■□□□ 1.07
SMARCA1P28370 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SMARCA1P28370 NEK4P2-201ENST00000580004 1012 ntBASIC21.76■■□□□ 1.07
SMARCA1P28370 MIR3180-5-201ENST00000583743 153 ntBASIC21.76■■□□□ 1.07
SMARCA1P28370 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 AC141257.4-201ENST00000634557 245 ntBASIC21.76■■□□□ 1.07
SMARCA1P28370 AC136944.6-201ENST00000634818 245 ntBASIC21.76■■□□□ 1.07
SMARCA1P28370 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCA1P28370 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
SMARCA1P28370 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.76■■□□□ 1.07
SMARCA1P28370 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 HEIH-201ENST00000623091 1652 ntBASIC21.75■■□□□ 1.07
SMARCA1P28370 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.75■■□□□ 1.07
SMARCA1P28370 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.75■■□□□ 1.07
SMARCA1P28370 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.75■■□□□ 1.07
SMARCA1P28370 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.75■■□□□ 1.07
SMARCA1P28370 BX664615.1-201ENST00000443558 458 ntBASIC21.75■■□□□ 1.07
SMARCA1P28370 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.75■■□□□ 1.07
SMARCA1P28370 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SMARCA1P28370 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCA1P28370 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.75■■□□□ 1.07
SMARCA1P28370 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.74■■□□□ 1.07
SMARCA1P28370 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.74■■□□□ 1.07
SMARCA1P28370 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
SMARCA1P28370 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
SMARCA1P28370 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.74■■□□□ 1.07
SMARCA1P28370 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
SMARCA1P28370 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.74■■□□□ 1.07
SMARCA1P28370 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.74■■□□□ 1.07
SMARCA1P28370 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.74■■□□□ 1.07
SMARCA1P28370 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCA1P28370 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCA1P28370 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCA1P28370 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.73■■□□□ 1.07
SMARCA1P28370 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.73■■□□□ 1.07
SMARCA1P28370 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.73■■□□□ 1.07
SMARCA1P28370 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCA1P28370 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCA1P28370 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.73■■□□□ 1.07
SMARCA1P28370 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.73■■□□□ 1.07
SMARCA1P28370 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.73■■□□□ 1.07
SMARCA1P28370 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCA1P28370 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.73■■□□□ 1.07
SMARCA1P28370 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCA1P28370 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCA1P28370 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms