Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 Six3os1_6.1-201ENST00000620790 196 ntBASIC14.46□□□□□ -0.09
HLA-DMBP28068 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 AL031598.1-201ENST00000561511 1773 ntBASIC14.46□□□□□ -0.09
HLA-DMBP28068 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HLA-DMBP28068 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HLA-DMBP28068 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
HLA-DMBP28068 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HLA-DMBP28068 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HLA-DMBP28068 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HLA-DMBP28068 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 AL512353.2-201ENST00000448759 1962 ntBASIC14.45□□□□□ -0.1
HLA-DMBP28068 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 UNC93B4-201ENST00000505679 747 ntBASIC14.45□□□□□ -0.1
HLA-DMBP28068 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 AC073648.6-201ENST00000641589 218 ntBASIC14.45□□□□□ -0.1
HLA-DMBP28068 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 HCG11-201ENST00000411553 5696 ntBASIC14.45□□□□□ -0.1
HLA-DMBP28068 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HLA-DMBP28068 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.45□□□□□ -0.1
HLA-DMBP28068 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 TREX2-204ENST00000370212 861 ntTSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 AC018470.1-201ENST00000624790 3129 ntBASIC14.44□□□□□ -0.1
HLA-DMBP28068 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HLA-DMBP28068 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
HLA-DMBP28068 FEM1AP3-201ENST00000403722 1741 ntBASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms