Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL1A1P02452 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
COL1A1P02452 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
COL1A1P02452 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL1A1P02452 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.87■■□□□ 1.25
COL1A1P02452 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC22.86■■□□□ 1.25
COL1A1P02452 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC22.86■■□□□ 1.25
COL1A1P02452 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC22.86■■□□□ 1.25
COL1A1P02452 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.86■■□□□ 1.25
COL1A1P02452 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
COL1A1P02452 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.86■■□□□ 1.25
COL1A1P02452 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC22.86■■□□□ 1.25
COL1A1P02452 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC22.86■■□□□ 1.25
COL1A1P02452 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.86■■□□□ 1.25
COL1A1P02452 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL1A1P02452 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.86■■□□□ 1.25
COL1A1P02452 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC22.85■■□□□ 1.25
COL1A1P02452 SEC1P-202ENST00000473944 940 ntBASIC22.85■■□□□ 1.25
COL1A1P02452 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC22.85■■□□□ 1.25
COL1A1P02452 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC22.85■■□□□ 1.25
COL1A1P02452 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC22.85■■□□□ 1.25
COL1A1P02452 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
COL1A1P02452 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 RCC2P3-201ENST00000418112 1537 ntBASIC22.85■■□□□ 1.25
COL1A1P02452 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.85■■□□□ 1.25
COL1A1P02452 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC22.85■■□□□ 1.25
COL1A1P02452 CNP-204ENST00000472031 1019 ntTSL 2 BASIC22.85■■□□□ 1.25
COL1A1P02452 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC22.85■■□□□ 1.25
COL1A1P02452 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL1A1P02452 AC141586.3-201ENST00000562166 1838 ntBASIC22.85■■□□□ 1.25
COL1A1P02452 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL1A1P02452 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC22.84■■□□□ 1.25
COL1A1P02452 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC22.84■■□□□ 1.25
COL1A1P02452 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC22.84■■□□□ 1.25
COL1A1P02452 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC22.84■■□□□ 1.25
COL1A1P02452 LINC01311-201ENST00000565162 1445 ntBASIC22.84■■□□□ 1.25
COL1A1P02452 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
COL1A1P02452 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC22.84■■□□□ 1.25
COL1A1P02452 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL1A1P02452 FXN-203ENST00000396366 922 ntTSL 2 BASIC22.84■■□□□ 1.25
COL1A1P02452 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL1A1P02452 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC22.84■■□□□ 1.25
COL1A1P02452 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC22.84■■□□□ 1.25
COL1A1P02452 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL1A1P02452 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC22.84■■□□□ 1.25
COL1A1P02452 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC22.84■■□□□ 1.25
COL1A1P02452 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC22.84■■□□□ 1.25
COL1A1P02452 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL1A1P02452 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL1A1P02452 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL1A1P02452 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC22.84■■□□□ 1.25
COL1A1P02452 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC22.83■■□□□ 1.25
COL1A1P02452 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL1A1P02452 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC22.83■■□□□ 1.25
COL1A1P02452 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC22.83■■□□□ 1.25
COL1A1P02452 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL1A1P02452 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC22.83■■□□□ 1.25
COL1A1P02452 AL512353.2-201ENST00000448759 1962 ntBASIC22.83■■□□□ 1.25
COL1A1P02452 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC22.83■■□□□ 1.25
COL1A1P02452 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC22.83■■□□□ 1.25
COL1A1P02452 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL1A1P02452 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.83■■□□□ 1.25
COL1A1P02452 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.24
COL1A1P02452 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.83■■□□□ 1.24
COL1A1P02452 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.83■■□□□ 1.24
COL1A1P02452 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL1A1P02452 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL1A1P02452 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL1A1P02452 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC22.83■■□□□ 1.24
COL1A1P02452 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC22.83■■□□□ 1.24
COL1A1P02452 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms