Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TNFP01375 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.54■□□□□ 0.56
TNFP01375 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 TEX21P-204ENST00000641479 1693 ntBASIC18.54■□□□□ 0.56
TNFP01375 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.53■□□□□ 0.56
TNFP01375 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.53■□□□□ 0.56
TNFP01375 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.53■□□□□ 0.56
TNFP01375 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.53■□□□□ 0.56
TNFP01375 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TNFP01375 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.53■□□□□ 0.56
TNFP01375 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.53■□□□□ 0.56
TNFP01375 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.53■□□□□ 0.56
TNFP01375 AL671277.2-201ENST00000458060 996 ntBASIC18.53■□□□□ 0.56
TNFP01375 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.53■□□□□ 0.56
TNFP01375 GCSHP2-201ENST00000560971 527 ntBASIC18.53■□□□□ 0.56
TNFP01375 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.53■□□□□ 0.56
TNFP01375 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 AC091076.1-201ENST00000610741 619 ntBASIC18.53■□□□□ 0.56
TNFP01375 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.53■□□□□ 0.56
TNFP01375 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
TNFP01375 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
TNFP01375 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TNFP01375 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
TNFP01375 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.52■□□□□ 0.56
TNFP01375 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.52■□□□□ 0.56
TNFP01375 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.52■□□□□ 0.56
TNFP01375 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.52■□□□□ 0.56
TNFP01375 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
TNFP01375 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.52■□□□□ 0.56
TNFP01375 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.52■□□□□ 0.56
TNFP01375 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TNFP01375 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TNFP01375 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TNFP01375 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.52■□□□□ 0.55
TNFP01375 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TNFP01375 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.52■□□□□ 0.55
TNFP01375 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TNFP01375 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
TNFP01375 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TNFP01375 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TNFP01375 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
TNFP01375 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.51■□□□□ 0.55
TNFP01375 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.51■□□□□ 0.55
TNFP01375 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.51■□□□□ 0.55
TNFP01375 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.51■□□□□ 0.55
TNFP01375 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.51■□□□□ 0.55
TNFP01375 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.51■□□□□ 0.55
TNFP01375 MIR3180-5-201ENST00000583743 153 ntBASIC18.51■□□□□ 0.55
TNFP01375 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.51■□□□□ 0.55
TNFP01375 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.51■□□□□ 0.55
TNFP01375 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.51■□□□□ 0.55
TNFP01375 AL121956.5-201ENST00000625261 221 ntBASIC18.51■□□□□ 0.55
TNFP01375 AL358472.4-201ENST00000633140 710 ntBASIC18.51■□□□□ 0.55
TNFP01375 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.51■□□□□ 0.55
TNFP01375 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.51■□□□□ 0.55
TNFP01375 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TNFP01375 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.51■□□□□ 0.55
TNFP01375 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TNFP01375 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.51■□□□□ 0.55
TNFP01375 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.5■□□□□ 0.55
TNFP01375 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.5■□□□□ 0.55
TNFP01375 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TNFP01375 STARP1-201ENST00000397973 869 ntBASIC18.5■□□□□ 0.55
TNFP01375 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.5■□□□□ 0.55
TNFP01375 KRT18P38-201ENST00000449496 1282 ntBASIC18.5■□□□□ 0.55
TNFP01375 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms