Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCD1O75127 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC24.34■■□□□ 1.49
PTCD1O75127 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC24.34■■□□□ 1.49
PTCD1O75127 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCD1O75127 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCD1O75127 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCD1O75127 AL162741.1-201ENST00000565563 1558 ntBASIC24.33■■□□□ 1.49
PTCD1O75127 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PTCD1O75127 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC24.33■■□□□ 1.49
PTCD1O75127 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC24.33■■□□□ 1.49
PTCD1O75127 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC24.33■■□□□ 1.49
PTCD1O75127 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC24.33■■□□□ 1.49
PTCD1O75127 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC24.33■■□□□ 1.49
PTCD1O75127 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC24.33■■□□□ 1.49
PTCD1O75127 RN7SL510P-201ENST00000581311 263 ntBASIC24.33■■□□□ 1.49
PTCD1O75127 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PTCD1O75127 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PTCD1O75127 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
PTCD1O75127 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC24.33■■□□□ 1.48
PTCD1O75127 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.48
PTCD1O75127 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC24.33■■□□□ 1.48
PTCD1O75127 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.48
PTCD1O75127 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
PTCD1O75127 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.32■■□□□ 1.48
PTCD1O75127 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
PTCD1O75127 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 PPIH-202ENST00000372549 327 ntTSL 3 BASIC24.32■■□□□ 1.48
PTCD1O75127 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC24.32■■□□□ 1.48
PTCD1O75127 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC24.32■■□□□ 1.48
PTCD1O75127 GRAMD4P1-201ENST00000435181 1110 ntBASIC24.32■■□□□ 1.48
PTCD1O75127 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC24.32■■□□□ 1.48
PTCD1O75127 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC24.32■■□□□ 1.48
PTCD1O75127 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTCD1O75127 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.32■■□□□ 1.48
PTCD1O75127 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD1O75127 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC24.31■■□□□ 1.48
PTCD1O75127 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD1O75127 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD1O75127 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD1O75127 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD1O75127 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD1O75127 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC24.31■■□□□ 1.48
PTCD1O75127 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
PTCD1O75127 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC24.31■■□□□ 1.48
PTCD1O75127 UNC93B7-201ENST00000509439 705 ntBASIC24.31■■□□□ 1.48
PTCD1O75127 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
PTCD1O75127 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC24.31■■□□□ 1.48
PTCD1O75127 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC24.31■■□□□ 1.48
PTCD1O75127 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD1O75127 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PTCD1O75127 PWWP2AP1-201ENST00000429776 2273 ntBASIC24.31■■□□□ 1.48
PTCD1O75127 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
PTCD1O75127 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC24.31■■□□□ 1.48
PTCD1O75127 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC24.3■■□□□ 1.48
PTCD1O75127 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24.3■■□□□ 1.48
PTCD1O75127 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC24.3■■□□□ 1.48
PTCD1O75127 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 KRT8P3-201ENST00000519669 1449 ntBASIC24.3■■□□□ 1.48
PTCD1O75127 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC24.3■■□□□ 1.48
PTCD1O75127 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC24.3■■□□□ 1.48
PTCD1O75127 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC24.3■■□□□ 1.48
PTCD1O75127 AP002414.4-201ENST00000589764 1148 ntBASIC24.3■■□□□ 1.48
PTCD1O75127 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 AC112497.1-201ENST00000624824 639 ntBASIC24.3■■□□□ 1.48
PTCD1O75127 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTCD1O75127 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC24.29■■□□□ 1.48
PTCD1O75127 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PTCD1O75127 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCD1O75127 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCD1O75127 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCD1O75127 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
PTCD1O75127 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC24.29■■□□□ 1.48
PTCD1O75127 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC24.29■■□□□ 1.48
PTCD1O75127 AL845331.1-201ENST00000424978 1190 ntBASIC24.29■■□□□ 1.48
PTCD1O75127 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC24.29■■□□□ 1.48
PTCD1O75127 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.29■■□□□ 1.48
PTCD1O75127 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC24.29■■□□□ 1.48
PTCD1O75127 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC24.29■■□□□ 1.48
PTCD1O75127 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC24.29■■□□□ 1.48
PTCD1O75127 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC24.29■■□□□ 1.48
PTCD1O75127 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms