Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.43■□□□□ 0.54
GFRA3O60609 BNIP3P18-201ENST00000593976 575 ntBASIC18.43■□□□□ 0.54
GFRA3O60609 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
GFRA3O60609 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.43■□□□□ 0.54
GFRA3O60609 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.43■□□□□ 0.54
GFRA3O60609 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
GFRA3O60609 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.43■□□□□ 0.54
GFRA3O60609 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
GFRA3O60609 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
GFRA3O60609 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
GFRA3O60609 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.42■□□□□ 0.54
GFRA3O60609 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
GFRA3O60609 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.42■□□□□ 0.54
GFRA3O60609 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
GFRA3O60609 AC023274.1-201ENST00000418278 595 ntBASIC18.42■□□□□ 0.54
GFRA3O60609 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.42■□□□□ 0.54
GFRA3O60609 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.42■□□□□ 0.54
GFRA3O60609 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.42■□□□□ 0.54
GFRA3O60609 MTDHP3-201ENST00000594186 672 ntBASIC18.42■□□□□ 0.54
GFRA3O60609 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.42■□□□□ 0.54
GFRA3O60609 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.42■□□□□ 0.54
GFRA3O60609 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
GFRA3O60609 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.42■□□□□ 0.54
GFRA3O60609 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
GFRA3O60609 HLA-J-201ENST00000462773 1622 ntBASIC18.41■□□□□ 0.54
GFRA3O60609 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
GFRA3O60609 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.41■□□□□ 0.54
GFRA3O60609 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
GFRA3O60609 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
GFRA3O60609 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 AL023284.2-201ENST00000405850 579 ntBASIC18.41■□□□□ 0.54
GFRA3O60609 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.41■□□□□ 0.54
GFRA3O60609 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.41■□□□□ 0.54
GFRA3O60609 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.41■□□□□ 0.54
GFRA3O60609 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.41■□□□□ 0.54
GFRA3O60609 AP002472.1-201ENST00000577490 586 ntBASIC18.41■□□□□ 0.54
GFRA3O60609 AP001269.4-201ENST00000609611 512 ntBASIC18.41■□□□□ 0.54
GFRA3O60609 AC114341.1-201ENST00000618070 349 ntBASIC18.41■□□□□ 0.54
GFRA3O60609 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.41■□□□□ 0.54
GFRA3O60609 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.41■□□□□ 0.54
GFRA3O60609 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.41■□□□□ 0.54
GFRA3O60609 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
GFRA3O60609 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.41■□□□□ 0.54
GFRA3O60609 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
GFRA3O60609 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
GFRA3O60609 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
GFRA3O60609 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
GFRA3O60609 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
GFRA3O60609 AC005034.1-201ENST00000426657 489 ntBASIC18.4■□□□□ 0.54
GFRA3O60609 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.4■□□□□ 0.54
GFRA3O60609 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.4■□□□□ 0.54
GFRA3O60609 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.4■□□□□ 0.54
GFRA3O60609 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.4■□□□□ 0.54
GFRA3O60609 AC079834.2-201ENST00000609776 1949 ntBASIC18.4■□□□□ 0.54
GFRA3O60609 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.4■□□□□ 0.54
GFRA3O60609 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.4■□□□□ 0.54
GFRA3O60609 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
GFRA3O60609 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.39■□□□□ 0.54
GFRA3O60609 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
GFRA3O60609 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
GFRA3O60609 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
GFRA3O60609 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
GFRA3O60609 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
GFRA3O60609 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
GFRA3O60609 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
GFRA3O60609 IGHGP-201ENST00000390555 1178 ntBASIC18.39■□□□□ 0.53
GFRA3O60609 RBM17P3-201ENST00000417687 1192 ntBASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms