Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC01549A6NIU2 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC01549A6NIU2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 AC018553.1-201ENST00000616682 1458 ntBASIC13.49□□□□□ -0.25
LINC01549A6NIU2 PKD1P5-201ENST00000532415 10291 ntBASIC13.49□□□□□ -0.25
LINC01549A6NIU2 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 ANKRD18DP-204ENST00000455355 1975 ntBASIC13.49□□□□□ -0.25
LINC01549A6NIU2 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC01549A6NIU2 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 AP001330.3-201ENST00000520123 633 ntBASIC13.48□□□□□ -0.25
LINC01549A6NIU2 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 AC105020.6-201ENST00000621523 1217 ntBASIC13.48□□□□□ -0.25
LINC01549A6NIU2 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.48□□□□□ -0.25
LINC01549A6NIU2 LINC02228-203ENST00000641970 1355 ntBASIC13.47□□□□□ -0.25
LINC01549A6NIU2 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 COBL-210ENST00000632460 1941 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC01549A6NIU2 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms