Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 GAS7-202ENST00000396115 929 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 TSPY23P-201ENST00000440136 739 ntBASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 AC083906.6-201ENST00000641366 219 ntBASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 AC135050.7-201ENST00000624508 2218 ntBASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TRAV3A0A0B4J244 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 AC138932.1-201ENST00000534164 6830 ntBASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 APTR-205ENST00000447009 902 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 RNA5SP413-201ENST00000516373 109 ntBASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRAV3A0A0B4J244 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV3A0A0B4J244 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 AL390961.4-201ENST00000623958 2535 ntBASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 TSPY21P-201ENST00000433481 731 ntBASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms