Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 SNORA18.2-201ENST00000383865 132 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 MIR659-201ENST00000384963 97 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXC1Q12948 EIF4A1P3-201ENST00000411521 244 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXC1Q12948 GOT2P5-201ENST00000433995 546 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 PRSS3P4-201ENST00000453323 162 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 RN7SL558P-201ENST00000497468 299 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 RNU6-581P-201ENST00000516214 105 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 SNORA31.8-201ENST00000516327 108 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 RNU6-1282P-201ENST00000516735 96 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXC1Q12948 AL137067.1-201ENST00000615933 120 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 AC006065.5-201ENST00000623427 349 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXC1Q12948 AL022322.2-201ENST00000624072 20397 ntBASIC4.43□□□□□ -1.7
FOXC1Q12948 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXC1Q12948 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXC1Q12948 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
FOXC1Q12948 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXC1Q12948 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXC1Q12948 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXC1Q12948 MFSD8-242ENST00000641690 4199 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXC1Q12948 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
FOXC1Q12948 RNA5SP513-201ENST00000364648 118 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXC1Q12948 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXC1Q12948 HMGN2P20-201ENST00000437531 273 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 RPL39P39-201ENST00000455840 151 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 RPS27AP10-201ENST00000496103 208 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 RNA5SP490-201ENST00000517141 136 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXC1Q12948 AC105129.1-201ENST00000560250 297 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 MIR6875-201ENST00000617506 72 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
FOXC1Q12948 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXC1Q12948 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXC1Q12948 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXC1Q12948 AL136164.3-201ENST00000624429 3978 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXC1Q12948 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXC1Q12948 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXC1Q12948 AC063976.2-201ENST00000425667 3556 ntBASIC4.42□□□□□ -1.7
FOXC1Q12948 AC010266.2-201ENST00000564741 3255 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
FOXC1Q12948 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
FOXC1Q12948 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.41□□□□□ -1.7
FOXC1Q12948 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
FOXC1Q12948 Y_RNA.107-201ENST00000363190 121 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 RNY4P6-201ENST00000363667 96 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 RNU6-884P-201ENST00000363889 107 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 Y_RNA.198-201ENST00000364013 98 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 Y_RNA.366-201ENST00000365540 102 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 RNU6-178P-201ENST00000384631 104 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 AL591419.1-201ENST00000427423 339 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 RPL7AP49-201ENST00000429522 581 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 AL591438.1-201ENST00000433508 581 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 AL121890.1-201ENST00000435457 205 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 RPS29P7-201ENST00000439662 171 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 RNU2-44P-201ENST00000516795 194 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 RNU6-709P-201ENST00000517257 104 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 AC093249.4-201ENST00000564755 259 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXC1Q12948 MIR4298-201ENST00000584380 73 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXC1Q12948 AC000095.2-202ENST00000637415 154 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
FOXC1Q12948 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXC1Q12948 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXC1Q12948 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.41□□□□□ -1.7
FOXC1Q12948 AL139811.1-201ENST00000424779 2299 ntBASIC4.41□□□□□ -1.7
FOXC1Q12948 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
FOXC1Q12948 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
FOXC1Q12948 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.4□□□□□ -1.7
FOXC1Q12948 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXC1Q12948 MAPK10-328ENST00000641553 4009 ntBASIC4.4□□□□□ -1.7
FOXC1Q12948 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXC1Q12948 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXC1Q12948 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXC1Q12948 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
FOXC1Q12948 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.4□□□□□ -1.7
FOXC1Q12948 Y_RNA.66-201ENST00000362862 102 ntBASIC4.4□□□□□ -1.71
FOXC1Q12948 SNORA26-201ENST00000391286 122 ntBASIC4.4□□□□□ -1.71
FOXC1Q12948 MIR1185-2-201ENST00000408687 86 ntBASIC4.4□□□□□ -1.71
FOXC1Q12948 TOMM22P1-201ENST00000418578 312 ntBASIC4.4□□□□□ -1.71
FOXC1Q12948 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXC1Q12948 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXC1Q12948 HMGN2P10-201ENST00000448085 265 ntBASIC4.4□□□□□ -1.71
FOXC1Q12948 AL162151.2-201ENST00000448875 158 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms