Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4AQ9UN37 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.36■□□□□ 0.53
VPS4AQ9UN37 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 AC145285.6-201ENST00000604632 637 ntBASIC18.36■□□□□ 0.53
VPS4AQ9UN37 MIR6786-201ENST00000616843 113 ntBASIC18.36■□□□□ 0.53
VPS4AQ9UN37 AC093503.3-201ENST00000624917 2352 ntBASIC18.36■□□□□ 0.53
VPS4AQ9UN37 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS4AQ9UN37 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 AL353807.1-201ENST00000427475 662 ntBASIC18.35■□□□□ 0.53
VPS4AQ9UN37 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4AQ9UN37 ZNF815P-204ENST00000434898 1737 ntBASIC18.35■□□□□ 0.53
VPS4AQ9UN37 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4AQ9UN37 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms