Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.51■■□□□ 1.03
COL20A1Q9P218 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.51■■□□□ 1.03
COL20A1Q9P218 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL20A1Q9P218 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.51■■□□□ 1.03
COL20A1Q9P218 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.51■■□□□ 1.03
COL20A1Q9P218 HYMAI.1-201ENST00000620949 238 ntBASIC21.51■■□□□ 1.03
COL20A1Q9P218 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL20A1Q9P218 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
COL20A1Q9P218 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
COL20A1Q9P218 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL20A1Q9P218 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL20A1Q9P218 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
COL20A1Q9P218 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.51■■□□□ 1.03
COL20A1Q9P218 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL20A1Q9P218 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL20A1Q9P218 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL20A1Q9P218 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL20A1Q9P218 AP000523.1-201ENST00000398242 1049 ntBASIC21.5■■□□□ 1.03
COL20A1Q9P218 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL20A1Q9P218 FAM86EP-206ENST00000510506 987 ntBASIC21.5■■□□□ 1.03
COL20A1Q9P218 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL20A1Q9P218 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL20A1Q9P218 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
COL20A1Q9P218 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL20A1Q9P218 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 FEM1AP3-201ENST00000403722 1741 ntBASIC21.49■■□□□ 1.03
COL20A1Q9P218 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.49■■□□□ 1.03
COL20A1Q9P218 AL671277.2-201ENST00000458060 996 ntBASIC21.49■■□□□ 1.03
COL20A1Q9P218 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 AC141586.3-201ENST00000562166 1838 ntBASIC21.49■■□□□ 1.03
COL20A1Q9P218 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL20A1Q9P218 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
COL20A1Q9P218 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.48■■□□□ 1.03
COL20A1Q9P218 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.48■■□□□ 1.03
COL20A1Q9P218 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 MCCD1P1-208ENST00000445732 328 ntBASIC21.48■■□□□ 1.03
COL20A1Q9P218 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.48■■□□□ 1.03
COL20A1Q9P218 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.48■■□□□ 1.03
COL20A1Q9P218 AC083849.1-201ENST00000615227 514 ntBASIC21.48■■□□□ 1.03
COL20A1Q9P218 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.48■■□□□ 1.03
COL20A1Q9P218 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.48■■□□□ 1.03
COL20A1Q9P218 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.48■■□□□ 1.03
COL20A1Q9P218 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL20A1Q9P218 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.48■■□□□ 1.03
COL20A1Q9P218 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL20A1Q9P218 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL20A1Q9P218 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL20A1Q9P218 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 AL032819.2-201ENST00000624543 2162 ntBASIC21.47■■□□□ 1.03
COL20A1Q9P218 AL512353.2-201ENST00000448759 1962 ntBASIC21.47■■□□□ 1.03
COL20A1Q9P218 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL20A1Q9P218 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL20A1Q9P218 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL20A1Q9P218 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL20A1Q9P218 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 MIR3180-5-201ENST00000583743 153 ntBASIC21.47■■□□□ 1.03
COL20A1Q9P218 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 AL121956.5-201ENST00000625261 221 ntBASIC21.47■■□□□ 1.03
COL20A1Q9P218 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
COL20A1Q9P218 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL20A1Q9P218 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms