Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
NKX3-1Q99801 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
NKX3-1Q99801 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
NKX3-1Q99801 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
NKX3-1Q99801 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16.56■□□□□ 0.24
NKX3-1Q99801 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.56■□□□□ 0.24
NKX3-1Q99801 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC16.56■□□□□ 0.24
NKX3-1Q99801 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.56■□□□□ 0.24
NKX3-1Q99801 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NKX3-1Q99801 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 AC090164.3-201ENST00000610780 2143 ntBASIC16.55■□□□□ 0.24
NKX3-1Q99801 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.55■□□□□ 0.24
NKX3-1Q99801 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 AC098934.4-201ENST00000564127 592 ntBASIC16.55■□□□□ 0.24
NKX3-1Q99801 AC142086.2-201ENST00000569753 217 ntBASIC16.55■□□□□ 0.24
NKX3-1Q99801 MIR4758-201ENST00000577688 71 ntBASIC16.55■□□□□ 0.24
NKX3-1Q99801 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 AC133041.1-202ENST00000642053 222 ntBASIC16.55■□□□□ 0.24
NKX3-1Q99801 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
NKX3-1Q99801 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NKX3-1Q99801 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 AC091874.3-201ENST00000512672 1195 ntBASIC16.54■□□□□ 0.24
NKX3-1Q99801 CD99P1-205ENST00000527459 561 ntBASIC16.54■□□□□ 0.24
NKX3-1Q99801 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 AC135050.7-201ENST00000624508 2218 ntBASIC16.54■□□□□ 0.24
NKX3-1Q99801 AP006587.1-201ENST00000534129 1502 ntBASIC16.54■□□□□ 0.24
NKX3-1Q99801 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.54■□□□□ 0.24
NKX3-1Q99801 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NKX3-1Q99801 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
NKX3-1Q99801 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.53■□□□□ 0.24
NKX3-1Q99801 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms