Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 CROCCP2-202ENST00000412962 2773 ntBASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 PCDHB19P-201ENST00000570871 2371 ntBASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN3Q8NCR9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLRN3Q8NCR9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.15■□□□□ 0.02
CLRN3Q8NCR9 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms