Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP38Q8NB14 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
USP38Q8NB14 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP38Q8NB14 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.2■□□□□ 0.98
USP38Q8NB14 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP38Q8NB14 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP38Q8NB14 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
USP38Q8NB14 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
USP38Q8NB14 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.2■□□□□ 0.98
USP38Q8NB14 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.2■□□□□ 0.98
USP38Q8NB14 AL353719.1-201ENST00000566847 864 ntBASIC21.2■□□□□ 0.98
USP38Q8NB14 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
USP38Q8NB14 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP38Q8NB14 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
USP38Q8NB14 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
USP38Q8NB14 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.2■□□□□ 0.98
USP38Q8NB14 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP38Q8NB14 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.2■□□□□ 0.98
USP38Q8NB14 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP38Q8NB14 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
USP38Q8NB14 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP38Q8NB14 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP38Q8NB14 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.19■□□□□ 0.98
USP38Q8NB14 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP38Q8NB14 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP38Q8NB14 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.19■□□□□ 0.98
USP38Q8NB14 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP38Q8NB14 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.19■□□□□ 0.98
USP38Q8NB14 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.19■□□□□ 0.98
USP38Q8NB14 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.19■□□□□ 0.98
USP38Q8NB14 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.19■□□□□ 0.98
USP38Q8NB14 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
USP38Q8NB14 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
USP38Q8NB14 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.19■□□□□ 0.98
USP38Q8NB14 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
USP38Q8NB14 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
USP38Q8NB14 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
USP38Q8NB14 AL691432.2-201ENST00000607222 2038 ntBASIC21.19■□□□□ 0.98
USP38Q8NB14 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.19■□□□□ 0.98
USP38Q8NB14 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP38Q8NB14 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP38Q8NB14 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP38Q8NB14 AC009237.14-201ENST00000609975 1594 ntBASIC21.19■□□□□ 0.98
USP38Q8NB14 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
USP38Q8NB14 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP38Q8NB14 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP38Q8NB14 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP38Q8NB14 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP38Q8NB14 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP38Q8NB14 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.18■□□□□ 0.98
USP38Q8NB14 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.18■□□□□ 0.98
USP38Q8NB14 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.18■□□□□ 0.98
USP38Q8NB14 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP38Q8NB14 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.18■□□□□ 0.98
USP38Q8NB14 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP38Q8NB14 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.18■□□□□ 0.98
USP38Q8NB14 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.18■□□□□ 0.98
USP38Q8NB14 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.18■□□□□ 0.98
USP38Q8NB14 AC005332.1-201ENST00000577698 1310 ntBASIC21.18■□□□□ 0.98
USP38Q8NB14 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP38Q8NB14 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
USP38Q8NB14 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP38Q8NB14 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.17■□□□□ 0.98
USP38Q8NB14 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.17■□□□□ 0.98
USP38Q8NB14 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.17■□□□□ 0.98
USP38Q8NB14 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.17■□□□□ 0.98
USP38Q8NB14 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.17■□□□□ 0.98
USP38Q8NB14 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
USP38Q8NB14 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.17■□□□□ 0.98
USP38Q8NB14 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.17■□□□□ 0.98
USP38Q8NB14 AC069148.1-201ENST00000608741 768 ntBASIC21.17■□□□□ 0.98
USP38Q8NB14 AC116407.4-201ENST00000623319 1061 ntBASIC21.17■□□□□ 0.98
USP38Q8NB14 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
USP38Q8NB14 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.17■□□□□ 0.98
USP38Q8NB14 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.17■□□□□ 0.98
USP38Q8NB14 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP38Q8NB14 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
USP38Q8NB14 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP38Q8NB14 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms