Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 AC034232.1-201ENST00000506026 1064 ntBASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 AC125437.2-201ENST00000625180 2167 ntBASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 CLDN5-201ENST00000403084 2357 ntBASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 AC016734.2-201ENST00000624325 1377 ntBASIC25.04■■□□□ 1.6
USHBP1Q8N6Y0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 MIR3180-1-201ENST00000580374 94 ntBASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 MIR3180-3-201ENST00000584616 94 ntBASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 AC011498.5-201ENST00000592027 486 ntBASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC25.03■■□□□ 1.6
USHBP1Q8N6Y0 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 AP002383.4-201ENST00000442518 975 ntBASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 TREX1-205ENST00000625293 1783 ntBASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 Z82202.1-201ENST00000623446 1880 ntBASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 KRT8P3-201ENST00000519669 1449 ntBASIC25.02■■□□□ 1.6
USHBP1Q8N6Y0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 TSSC2-201ENST00000450217 709 ntBASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USHBP1Q8N6Y0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms