Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 AC008622.2-201ENST00000617006 1229 ntBASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 AC010653.2-201ENST00000623505 997 ntBASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
C9orf40Q8IXQ3 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 SLC25A3P1-201ENST00000443844 931 ntBASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
C9orf40Q8IXQ3 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 MIR4674-201ENST00000582457 87 ntBASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.52■□□□□ 0.4
C9orf40Q8IXQ3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
C9orf40Q8IXQ3 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
C9orf40Q8IXQ3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
C9orf40Q8IXQ3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.52■□□□□ 0.39
C9orf40Q8IXQ3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
C9orf40Q8IXQ3 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.52■□□□□ 0.39
C9orf40Q8IXQ3 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
C9orf40Q8IXQ3 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
C9orf40Q8IXQ3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
C9orf40Q8IXQ3 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
C9orf40Q8IXQ3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
C9orf40Q8IXQ3 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
C9orf40Q8IXQ3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
C9orf40Q8IXQ3 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.5■□□□□ 0.39
C9orf40Q8IXQ3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
C9orf40Q8IXQ3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms